Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a15
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 30 0.13
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 27 0.71
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 0.71
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 2.2
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 25 2.9
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 3.8
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 3.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 3.8
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 5.0
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 24 6.7
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 24 6.7
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 24 8.8
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 24 8.8
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 24 8.8
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 297 NVLKFKPPMVFTTQDADRLVETLDRVLGEL 208
N+++F PP+V T +D + +E + + L +L
Sbjct: 395 NIIRFSPPLVITEEDLMKGIEVIKKSLNDL 424
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 0.71
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = -1
Query: 297 NVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIK 121
NV K ++ T+Q R+ ETLD L + D+T I +E TPI T P ++ I+
Sbjct: 50 NVRKTYCGLIVTSQ---RVSETLDEALKQEDETERQKILME---TPIFTVGPATDDSIR 102
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 0.71
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 240 VETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIKSSVQKAIKT**MFYYCNSIN 61
V T+ +L L D+RI KLE L T + + ++ +K+ + +K + C N
Sbjct: 162 VTTIPALLRALQDSRIDREKLEALATFLASASIDEKVYVKNCKKDLLKNFVFEHSCRKAN 221
Query: 60 KL 55
+L
Sbjct: 222 EL 223
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 2.2
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -1
Query: 264 TTQDADR--LVETLDRVLGELDD-TRISNIKLEVLVTPI 157
T +D +R LV+ +DR+L +LDD R K+ V++ P+
Sbjct: 427 TLEDQERHLLVKVIDRILYKLDDLVRPFTHKILVVIEPL 465
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 2.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 312 DGPDSNVLKFKPPMVFTTQDADRLVETLDRVL 217
DG + + PP + T + D LVE L + +
Sbjct: 420 DGTRGDHVLLAPPYIITREQIDELVEALSKTI 451
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 3.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 164 VTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLIN 325
VTS I L K + +S +L A C +N +G + T SR++N
Sbjct: 370 VTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINLLGNIQVVTF----SRIVN 419
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 3.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 297 NVLKFKPPMVFTTQDADRLVETLDRVLGEL 208
NV+ K P V T + + +ETL VLGE+
Sbjct: 327 NVVDGKIPEVSTAANPEVCLETLKAVLGEI 356
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 3.8
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 167 TSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLS-GPSRLINIFSSLI 343
+ST++L + V+SNS +L+ STS S T + L S GPS + + SSL
Sbjct: 828 SSTTSLAANKGVNSNSITSLNLESTSSVTSTAYTTDSVTSTTALTSQGPSSSV-VSSSLS 886
Query: 344 LLTTCFASV 370
T+ S+
Sbjct: 887 STTSLSTSI 895
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 5.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 107 FCTELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSP 217
F +L + FG SVL+ + S++N+ ++ S SP
Sbjct: 3 FILYVLASLVLFGLSVLLSLYSSANVYSATVMISQSP 39
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 342 MREENILISR-DGPDSNVLKFKPPM 271
MR+ LI R GP +NVLK K P+
Sbjct: 1 MRDLRKLIPRLRGPGTNVLKMKKPL 25
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 104 AFCTELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSL 247
AF T + SF + + +T L+F SS+SP+ ++ SL
Sbjct: 413 AFVTVITSLVSFLNPWLRLDMTLGMELLFQECKSSSSPELINLCDPSL 460
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -1
Query: 219 LGELDDTRISNIKLEVLVTPINTEVPKKENVIKSSVQKAIKT 94
L E + N+K+E +T + E+ K++ IKS + ++++
Sbjct: 105 LNETEHLSEENLKIESSITFTSEEIEKEKENIKSVLLPSVQS 146
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 197 LVSSNSPKTLSRVSTSLSASCVVNTMGGLN 286
L++ N P S+ S S +AS T+ G+N
Sbjct: 266 LIARNHPDVKSQASVSSTASTTGQTVKGVN 295
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = -1
Query: 342 MREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELD 205
++EE I R+ +FK + + ++R +ET + + EL+
Sbjct: 189 LKEERIQQMRNEASQRRFEFKTTIECLEESSNRAIETYENRIAELE 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,505
Number of Sequences: 5004
Number of extensions: 27553
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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