Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a14
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.42 
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   2.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   3.0  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.2  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   6.8  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   9.0  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +1

Query: 94  INHKSLHCT*TNSVAFLEDPVLAHHDPCQEELPSFLEEGHPSWGLLAFEEEQKVDHDF-L 270
           I+ ++   T T++V  +   + A+ + C + L  ++E      GL+A E+ + V+  F L
Sbjct: 86  ISPRNRSLTSTSAVEAVPASISAYDEFCSKYLSKYMELSKKIGGLIA-EQSEHVEKAFNL 144

Query: 271 VPCVVEMARLLLWQDLEDPEVL 336
           +  V+ +A      D++ PE+L
Sbjct: 145 LRQVLSVALKAQKPDMDSPELL 166


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 205 EGHPSWGL-LAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEH 372
           +GH SW   + F+  +  D ++ +  V    +LLLW D     + RP   +Y  + H
Sbjct: 403 QGHKSWVTDVIFDAWRCDDDNYRIASVGLDRKLLLW-DFSVSAIHRPKSAVYYVNHH 458


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +1

Query: 172 PCQEELPSFLEEGHPSWGLLAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLR 339
           P ++ELP+ L    P  G LAF +++ V +   +  V + A+L +  +L + ++LR
Sbjct: 329 PLEKELPAALPTEIPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTI-AELRERKILR 383


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 275 GTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 132
           GTR S S F +SS++        SS +  SSS   S  +++ SS +++
Sbjct: 138 GTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSS 185


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 307 WQDLEDPEVLRPGQ 348
           W DLE+P VL+ GQ
Sbjct: 572 WHDLENPIVLKKGQ 585


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 245 SSSNARRPHDGWPSSRNDGSSS 180
           S SNA  PH+ W S     S+S
Sbjct: 9   SFSNASNPHNAWGSENISNSNS 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,006
Number of Sequences: 5004
Number of extensions: 25138
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)