Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a14
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796... 29 1.3
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 28 3.8
01_01_0051 + 389051-389623 24 4.9
08_02_0491 + 17749763-17750143,17750694-17750751,17750846-177508... 27 6.7
06_01_0045 + 420300-420530,422730-423006,423974-424014 27 6.7
03_04_0006 + 16257288-16259522 27 6.7
10_06_0174 - 11485684-11485962 27 8.8
10_01_0189 + 2097918-2098191,2101711-2102747 27 8.8
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963... 27 8.8
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 27 8.8
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509 27 8.8
>03_02_0763 -
10977793-10978092,10978896-10978996,10979580-10979648,
10979787-10979857,10979946-10980100,10980348-10980477,
10980946-10981013,10981335-10981592
Length = 383
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 263 SWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWW 162
SW+ C + P + +++ND WHG+WW
Sbjct: 213 SWNPHCRYLDGIGPKENNSNAQND----WHGAWW 242
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 275 GTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWA 159
G RK STF + RR S N SSS SWW+
Sbjct: 162 GPRKPESTFPFGNMLRRSQKA-ESCSNSNSSSTSSSWWS 199
>01_01_0051 + 389051-389623
Length = 190
Score = 24.2 bits (50), Expect(2) = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 206 SSRNDGSSSWHGSWWARTGSS 144
SS + SSS SWW R+ S
Sbjct: 168 SSTSSSSSSSGSSWWTRSARS 188
Score = 21.8 bits (44), Expect(2) = 4.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 284 TTHGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSS 180
++HGT S S+ SSS++ + SS + S S
Sbjct: 94 SSHGTDTSSSSESSSSSSSSSSESSSSSSSSSSES 128
>08_02_0491 +
17749763-17750143,17750694-17750751,17750846-17750891,
17750932-17750998,17751100-17751108
Length = 186
Score = 27.1 bits (57), Expect = 6.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 257 TTISWCHVLLRWPAYSSGRTLK 322
TT+ WC + WP G T++
Sbjct: 12 TTVQWCGCMASWPRRDHGATVR 33
>06_01_0045 + 420300-420530,422730-423006,423974-424014
Length = 182
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 254 LTTISWCHVLLRWPAYSSGRTL 319
LT WC+ +RW A+ +G TL
Sbjct: 125 LTPWRWCNQAVRWLAWKTGTTL 146
>03_04_0006 + 16257288-16259522
Length = 744
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = -2
Query: 281 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWH 174
T WST ++ A P + DG SWH
Sbjct: 697 TDDPNAQWSTLVTTKEAAAYRPACPYAHPDGGDSWH 732
>10_06_0174 - 11485684-11485962
Length = 92
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 215 GWPSSRNDGSSSWHGSWW 162
GW + SSS HG WW
Sbjct: 60 GWRWRKKPSSSSPHGGWW 77
>10_01_0189 + 2097918-2098191,2101711-2102747
Length = 436
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 229 LAFEEEQKVDHDFLVPCVVEMARLL 303
LAF VDH L+P V E A LL
Sbjct: 271 LAFGSTDPVDHPQLIPIVEEFAELL 295
>05_03_0424 -
13795721-13795900,13796134-13796202,13796260-13796385,
13797224-13798166,13798263-13799248
Length = 767
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 253 VDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCL 354
V V CV++ + LW +PE+++PG +
Sbjct: 659 VSRSLQVGCVLDAKFVSLWLGWHEPEMVKPGSAV 692
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 166 HDPCQEELPSFLEEGHPSWGLLAFEEEQKVDHD 264
H P E L SF E G+P L+AF VDHD
Sbjct: 504 HIPKIEGLGSFTEAGNPVMALVAF-LSGLVDHD 535
>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
Length = 332
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 206 SSRNDGSSSWHGSWWARTGSSRNAT 132
S+ D +SW G WART + +AT
Sbjct: 62 SATVDAPASWSGRMWARTLCAEDAT 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,771,890
Number of Sequences: 37544
Number of extensions: 169050
Number of successful extensions: 584
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -