Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a14
         (441 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L02919-1|AAA28858.1|  199|Drosophila melanogaster ribonucleoprot...    35   0.043
AY061171-1|AAL28719.1|  199|Drosophila melanogaster LD14049p pro...    35   0.043
AE014134-1881|AAF52947.1|  199|Drosophila melanogaster CG5352-PA...    35   0.043
AE013599-3518|AAN16119.1|  281|Drosophila melanogaster CG32834-P...    31   0.53 
BT023954-1|ABB36458.1|  891|Drosophila melanogaster AT29009p pro...    27   8.6  
BT003780-1|AAO41461.1|  143|Drosophila melanogaster LP04723p pro...    27   8.6  

>L02919-1|AAA28858.1|  199|Drosophila melanogaster ribonucleoprotein
           protein.
          Length = 199

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 307 RGVGGPSQQHMAPGNRG 257
           RGVGGP+QQHMAP  RG
Sbjct: 130 RGVGGPAQQHMAPMGRG 146


>AY061171-1|AAL28719.1|  199|Drosophila melanogaster LD14049p
           protein.
          Length = 199

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 307 RGVGGPSQQHMAPGNRG 257
           RGVGGP+QQHMAP  RG
Sbjct: 130 RGVGGPAQQHMAPMGRG 146


>AE014134-1881|AAF52947.1|  199|Drosophila melanogaster CG5352-PA
           protein.
          Length = 199

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 307 RGVGGPSQQHMAPGNRG 257
           RGVGGP+QQHMAP  RG
Sbjct: 130 RGVGGPAQQHMAPMGRG 146


>AE013599-3518|AAN16119.1|  281|Drosophila melanogaster CG32834-PA
           protein.
          Length = 281

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 224 PHDG-WPSSRNDGSSSWHGSWWAR 156
           P DG W +    GS+SW GSWW R
Sbjct: 138 PDDGSWCTVSGWGSTSWWGSWWDR 161


>BT023954-1|ABB36458.1|  891|Drosophila melanogaster AT29009p
           protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 154 VLAHHDPCQEELPSFLEEGHPSWGLLAFEEEQKVDHDFLVPCV 282
           V A  DP   +LP   E     +  +   +E ++  + +VPC+
Sbjct: 521 VTAETDPASYKLPERRERDRDRFKTIKISKEMRLQPEIIVPCI 563


>BT003780-1|AAO41461.1|  143|Drosophila melanogaster LP04723p
           protein.
          Length = 143

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +1

Query: 76  STVFNNINHKSLHCT*TNSVAFLEDPVLAHHDPCQEELPSFLEEGHPSWGL---LAFEEE 246
           S + N INH +LH T  +        +L H  PC     +      P   +   LA  + 
Sbjct: 55  SRLRNKINHSALHDTPHSVSRMTPKKILCHQTPCHTIACTHARSKTPKPMITTPLAEHDH 114

Query: 247 QKVDHD 264
           Q+ +HD
Sbjct: 115 QETNHD 120


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,186,005
Number of Sequences: 53049
Number of extensions: 283117
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)