Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a12
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    32   0.079
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    29   0.56 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    28   1.3  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   1.3  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    28   1.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.2  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   2.2  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   2.2  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   3.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   3.9  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    27   3.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.9  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   5.2  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.9  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.9  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 32.3 bits (70), Expect = 0.079
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 741 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 583
           I VE    QPEDSK T+V      +S +EK +    + S D  A + +++  +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = -2

Query: 738 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 559
           +VEE  A+   S         E S   KPSA  AE   D    I   V  I L    +  
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347

Query: 558 AAAIPEI---KTPEAADAPKLADNPVDEDK 478
           +    E+   KTP   DAP       +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = -2

Query: 738 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 559
           KVEEP+ + ++   + + TV +  +E+ P        A S       VKK    P+ E  
Sbjct: 462 KVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSEDVKK---EPSEEKK 518

Query: 558 AAAIPEIKTPEAADAPKLADNPVDEDKP 475
                E   P+A  AP      V+E +P
Sbjct: 519 LEVSDE--APKA--APLAESKKVEEKEP 542


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = -2

Query: 771 FPMLKQNSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS-AAIIPNMV 595
           FP   +  A    E+PA  P +  T  Q    E +  +  + T     AD+    +    
Sbjct: 388 FPATTEEVAPASEEKPATGPAEESTSTQN--VEQASTQNDNGTPIGQIADAIEEDVKGTA 445

Query: 594 KKIDLAPTVESDAA----AIPEIKTPEAAD 517
           + ++ A   E+D A    A+P++ TP A D
Sbjct: 446 QSVEQAFIEETDIALPDIALPDVATPTADD 475


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 25/75 (33%), Positives = 35/75 (46%)
 Frame = -2

Query: 711 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT 532
           E+S   +    +E+SK  KP+ TD            N  K+I++A    S  A  P+  T
Sbjct: 33  EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82

Query: 531 PEAADAPKLADNPVD 487
           P AA AP  A + VD
Sbjct: 83  P-AAVAPVEATSAVD 96


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = -2

Query: 753 NSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 574
           N AD + E   A  ED   E +  V E S  ++    + E        I    KK+   P
Sbjct: 235 NEADEEEEAVEAMEEDEVAEDEDVVLETSISQEEEKKNIENPDTEVTFISADTKKVTEIP 294

Query: 573 TV 568
           TV
Sbjct: 295 TV 296


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -2

Query: 705 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI-KTP 529
           +K+E  A +A    EE  S        +  A       K  +   V SDA  + +  KT 
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311

Query: 528 EAADAPKLADNPVDEDKPAD 469
           E AD     +  +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 731 KNQLLSLKIQKLKYKLPSLKFQKKKNL 651
           KN LLS KI +  Y+  S+++QK KN+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 172 VGSGARVNVFAASSGRVSKTV 234
           V SGARV ++ ASS  V KT+
Sbjct: 57  VTSGARVQIYGASSRSVKKTI 77


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = -2

Query: 765 MLKQNS-ADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 589
           + KQN+  D  +++     + S + +    + + K+ +PS  +   +A   +  PN VK 
Sbjct: 527 LAKQNNLTDTNLKDAVDSLKQSLSFINLDASAL-KDREPSEKELPSTAKETSFAPNAVKT 585

Query: 588 I--DLAPTVESDAAAIPEIKTPEA 523
           +  D+ P   +      +I  PEA
Sbjct: 586 LDEDITPQSSNWQTVAKQIIFPEA 609


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 762 LKQNSADIKVE-EPAAQPEDSKTEVQATVAEISKEEKP 652
           LK   +DIK + E +   +DSK +V  TV EIS   +P
Sbjct: 265 LKDMQSDIKPDVEKSDAMDDSKMKVDYTVNEISNAVQP 302


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 756 QNSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 619
           Q    I  E PA    + K   +  + + S  E+PS T  EG+ D+
Sbjct: 604 QRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/62 (19%), Positives = 31/62 (50%)
 Frame = -2

Query: 768 PMLKQNSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 589
           P+L  ++++   EE  + PE +  +    + ++    +   T  + S DS   +P+ +++
Sbjct: 5   PVLNLDTSNGFSEEYISHPERNDNQGIVEITDLVFSSESKLTQRKESRDSKTFVPSFLEE 64

Query: 588 ID 583
           +D
Sbjct: 65  LD 66


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 738 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 616
           K  + A+ PE SK  V+       KEE  S +++E S+  +
Sbjct: 56  KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 768 PMLKQNSADIKVEEPAAQPEDSKTEVQATV 679
           P LKQNS +I  ++ +++ +D+K +   T+
Sbjct: 131 PKLKQNSNNISKKQNSSRNDDTKVKKDTTI 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,423
Number of Sequences: 5004
Number of extensions: 36475
Number of successful extensions: 116
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)