Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a12
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0559 + 18516732-18516746,18516893-18517330 33 0.25
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883... 32 0.58
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 31 0.77
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 31 0.77
03_06_0440 - 33954726-33954809,33955141-33955475,33955929-339561... 31 1.0
02_04_0143 + 20172128-20172355,20172452-20173174 30 1.8
11_01_0612 + 4902197-4902929,4903443-4904071 30 2.4
01_05_0629 + 23809899-23810720 29 3.1
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 29 4.1
12_01_0419 - 3316866-3318172,3318249-3318360 29 4.1
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 4.1
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 29 4.1
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 4.1
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 29 4.1
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 29 5.4
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 28 7.2
07_03_1158 - 24424060-24424461 28 7.2
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823 28 7.2
07_03_1107 - 24024387-24024497,24025799-24026410 28 9.5
06_03_0854 + 25400855-25403741,25406174-25407708 28 9.5
05_03_0066 + 7980038-7981468 28 9.5
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 28 9.5
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 9.5
01_01_1015 + 8029884-8030676,8030755-8030771 28 9.5
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 33.1 bits (72), Expect = 0.25
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = -2
Query: 732 EEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDL-APTVESDA 556
E A+ ++++ AE KE +P + E + P + A E A
Sbjct: 53 EAEVAETKEAEPAAAEPAAEEVKEAEPEPAEPEAEPAKEEVAPEPAAAAEAEAKEAEPAA 112
Query: 555 AAIPEIKTPEAADAPKLADNPVDEDKP 475
E+K EAA AP + V+E P
Sbjct: 113 QVAEEVKEEEAAPAPAAEEVKVEEAAP 139
>02_05_0415 +
28787353-28787496,28787658-28788204,28788297-28788392,
28788532-28788645,28788929-28789962,28790053-28790124
Length = 668
Score = 31.9 bits (69), Expect = 0.58
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Frame = -2
Query: 759 KQNSADIKVEEPAAQP----EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK 592
++ +A KVEE A P +T + A + +E + T SA S ++
Sbjct: 152 RRTAAARKVEEAAPTPATLRRSQRTAARKAAAPVVEEVTATKTTTRRSARSKVMV----- 206
Query: 591 KIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPA 472
DL VE A A+ E+K E +D DE++ A
Sbjct: 207 --DLEQEVEDMAVALQEVKVQEEDPKDVASDEKCDEEEEA 244
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -2
Query: 723 AAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIP 544
A +P D +TE++ TV ++ E + G D+ + + IDL SD A P
Sbjct: 47 ANEPNDGETEIETTVDDVLSESTHEQVENHGDGDN---VDDSSVHIDLD---SSDTAFQP 100
Query: 543 EIKTPEAADA 514
EI P D+
Sbjct: 101 EIFDPRCWDS 110
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 31.5 bits (68), Expect = 0.77
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = -2
Query: 720 AQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPE 541
A+ E K + A AE E P+AT+ +G + A P + +PT + A P
Sbjct: 210 AKYEKQKVQGPAESAEAVAEGSPTATEQKGITHTPAPAPCVSPVAAPSPTPCASPVAAPS 269
Query: 540 ---IKTPEAADAP-KLADNPVDEDKPADI 466
+P AA +P +PV EDK ++
Sbjct: 270 PAPCVSPVAAPSPAPPCKSPVPEDKSCEL 298
>03_06_0440 -
33954726-33954809,33955141-33955475,33955929-33956106,
33956205-33956285,33956629-33956740,33956831-33956931,
33957001-33957174,33957313-33957486,33957683-33957765,
33957852-33957912,33958069-33958251,33959630-33959848
Length = 594
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 94 IHLGVE---NATLTHMG*FHTYTLQLISRVGSGARVNVFAASSGRVSKTVNTRPPLNAFA 264
IHLG E T + H YTL + + G +N+ ++S+++ RPP N F
Sbjct: 264 IHLGTEMCKKILATGIKTLHLYTLNM-EKSALGILMNLGLIEESKISRSLPWRPPTNVFR 322
Query: 265 V 267
V
Sbjct: 323 V 323
>02_04_0143 + 20172128-20172355,20172452-20173174
Length = 316
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = -2
Query: 759 KQNSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDL 580
+Q + + E AA+PE ++ E+++EEK D+ A +A+ P+ D
Sbjct: 234 EQETTGEEAEAAAAEPEAAQEGGGGGAQEVAEEEKRVDPDSVQVAAAASSTPSPPSSADD 293
Query: 579 APTVESDAAAIPEIKTPEAAD 517
+S A ++ P A D
Sbjct: 294 DEEEKSKEEAAADVSAPAAPD 314
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 621 SAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLAD 499
+AA PN V ID+ AAA P + PEAA P L D
Sbjct: 25 AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64
>01_05_0629 + 23809899-23810720
Length = 273
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = -2
Query: 711 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT 532
E S+ + AT A E P+ATDA S S A D + E+D AA +
Sbjct: 99 EPSEADPAATDASEPSEADPAATDA--SEPSEADPAPRATSADASEPSEADPAATDASEP 156
Query: 531 PEAADAPKLADNPVDED 481
EA A A P + D
Sbjct: 157 SEADPAATDASEPSEAD 173
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/87 (22%), Positives = 31/87 (35%)
Frame = -2
Query: 729 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAA 550
+PAA +E + S+ + SAD++ D + E+D AA
Sbjct: 104 DPAATDASEPSEADPAATDASEPSEADPAPRATSADASEPSEADPAATDASEPSEADPAA 163
Query: 549 IPEIKTPEAADAPKLADNPVDEDKPAD 469
+ EA AP+ E AD
Sbjct: 164 TDASEPSEADPAPRATSADASEPSEAD 190
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/92 (21%), Positives = 41/92 (44%)
Frame = -2
Query: 753 NSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 574
++ D K+ EP A ++TE++ +E S +P T+A + A++
Sbjct: 460 STVDGKLVEPTASVSATETEIKEDSSEGSVTTEP--TEAASTEFVTAVVEESAPTASSVE 517
Query: 573 TVESDAAAIPEIKTPEAADAPKLADNPVDEDK 478
T E D+ ++ P A+ + A++ D +
Sbjct: 518 TSEDDSTVDDKLVEPTASVSATEAESKEDSSE 549
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -2
Query: 687 ATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPK 508
ATV E + + P+A + A P + P E AA PE + P+ P
Sbjct: 306 ATVDEPEQPKPPAAVEPPVQEPPAEETPTATEPEPEPPAAEEPPAAEPE-QEPQPETPPV 364
Query: 507 LADNPVDEDKP 475
++ P +E P
Sbjct: 365 ESETPAEEQAP 375
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = -2
Query: 636 EGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT----PEAADAPKLADNPVD--EDKP 475
+GSA S I N + ++L + A I + P A D P LAD P + ED+P
Sbjct: 82 DGSAASFGISINHTRALELPGVCKVQAPPISQCTAVPTPPPAPDTPTLADEPAETNEDEP 141
Query: 474 A 472
+
Sbjct: 142 S 142
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 765 MLKQNSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 607
++ Q+ D++ E+ E+ + EVQ V E +P DAEG+A A ++
Sbjct: 253 VVAQDGDDVE-EQKGEGEEEMEEEVQVEVQEKRGRGRPRKADAEGNALQARVL 304
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 729 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEG 631
EP A PE + + Q + +K+ PSA D +G
Sbjct: 132 EPPAPPEPKQQQQQQQAGDAAKQAAPSADDEDG 164
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/76 (22%), Positives = 32/76 (42%)
Frame = -2
Query: 702 KTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEA 523
+T++ E+ K + AT D+ + K++ + S AAA P +P A
Sbjct: 150 ETKLGKVQDELKKLREQLATAEAAKKDAQVALEEAKKRVGTKGSPASAAAASPRSPSPVA 209
Query: 522 ADAPKLADNPVDEDKP 475
+ PK + + +P
Sbjct: 210 VETPKKTEQQLKVTEP 225
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -2
Query: 723 AAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIP 544
AA S A A+ S E P A++ + S +IP LAP S AA+
Sbjct: 47 AAAAAASSAAAAAAQAQASSEGSPPASELSPGSLSPVMIPPPRHADHLAPGSPSPAASPS 106
Query: 543 EIKTPEA-ADAPKLADNPVDEDKPADI 466
E+ E+ + AP A+ + + A+I
Sbjct: 107 ELGDDESWSRAPSAAELESNNNDLAEI 133
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 657 KPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDK 478
K SA +EGS+ ++P + K+D P + I P+ + LA + ++DK
Sbjct: 464 KISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQDIERGGLAVDCGEDDK 523
>07_03_1158 - 24424060-24424461
Length = 133
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = -2
Query: 723 AAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIP 544
AA E+ + V EI K E P ++P + K +L E A+P
Sbjct: 39 AAAAEEEEHPAHPAVPEIPKPELPELPKVPELPHP--VVPELPKP-ELPKIPEVPHLAVP 95
Query: 543 EIKTPEAADAPK 508
E+ PE + PK
Sbjct: 96 ELPKPEVPEIPK 107
>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
Length = 264
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 714 PEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAA 553
P K E VA + +E+ A D E D ++ +++K L P+VE DAA
Sbjct: 177 PTGDKVEFYG-VAVLKVDEQLRAEDVEVYYDPGELLGDLLKGPLLVPSVEKDAA 229
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/85 (25%), Positives = 31/85 (36%)
Frame = -2
Query: 756 QNSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA 577
Q + PA P S + A A + P+A+ +A + P + A
Sbjct: 22 QKATPTPAAAPATTPPASSKKTPAPAAAPTTTTPPAASTPPAAAPTTPATPAPAE----A 77
Query: 576 PTVESDAAAIPEIKTPEAADAPKLA 502
PT + A P T A APK A
Sbjct: 78 PTTPAPTKAPPTKSTKAPAPAPKAA 102
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = -2
Query: 681 VAEISKEEKPSATDAEGSADSAAIIPN----MVKKIDLAPTVESDAAAIPEIKTPEAA 520
V + PSA A A + ++ PN V LAP + AAA P + P AA
Sbjct: 609 VVTVGAPPPPSAAPAPAPASAPSLEPNDIIAPVVSSTLAPGASAAAAAAPAVAPPAAA 666
>05_03_0066 + 7980038-7981468
Length = 476
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 765 MLKQNSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 589
+L + + KVE + E SK E+ + E SKEE S A+SA+ + +KK
Sbjct: 392 VLDRKLKEKKVESNSTVTEKSK-ELTSRETEESKEELTSRKTDANDAESASSVAEAIKK 449
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = -2
Query: 735 VEEPAAQPEDSKTEVQATVAEI-SKEEK--PSATDA-EGSADSAAIIPNMVKKIDLAPTV 568
V AA S+ EV A + SK + SATD+ + SAD A ++P ++++AP
Sbjct: 560 VASAAAPKTSSRMEVAPDSAPLLSKAGRRVESATDSRKESADVAPVVPRTTSRMEMAPDS 619
Query: 567 ESDAAA 550
+ +A
Sbjct: 620 RREISA 625
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 762 LKQNSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 622
LK+ SA + VEEP SK + + A+ SK+E P SA+
Sbjct: 620 LKEESA-LSVEEPNTTSTSSKNTRKLSNAKESKDESPQVEPKPSSAN 665
>01_01_1015 + 8029884-8030676,8030755-8030771
Length = 269
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = -2
Query: 756 QNSADIKVEEPAAQPEDSKTEVQATVAEI-SKEEKPSATDAEGSADSAAIIPNMVKKIDL 580
++ D+ A+ D+K + A + + +K+ P + A S+D I N ++K L
Sbjct: 172 RDMVDVACRVLEAEARDAKEQAAAPPSPVLTKKTTPKNSAANRSSDKPLKI-NSIQKPAL 230
Query: 579 APTVESDAAAIPEIKTPEAADAPKLADNPVDEDK 478
A + AAA TP + +P P+ + +
Sbjct: 231 AFAAAAAAAAAAASSTPLSTPSPAGERKPMKQGR 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,265
Number of Sequences: 37544
Number of extensions: 245343
Number of successful extensions: 871
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -