Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a10
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0366 + 9494205-9494810                                           27   2.6  
10_01_0159 - 1807806-1809386                                           27   3.5  
10_01_0160 - 1812213-1813790                                           26   4.6  
02_02_0368 + 9501965-9501983,9502189-9502257,9502902-9503257,950...    25   8.0  

>02_02_0366 + 9494205-9494810
          Length = 201

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 194 VGDPVVIAVSASGAVTITASGTASARIFVL 283
           +GDP  +   A+GAV +T + T   R+ VL
Sbjct: 136 LGDPGFLGDVAAGAVAVTTATTVRGRVAVL 165


>10_01_0159 - 1807806-1809386
          Length = 526

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 224 ASGAVTITASGTASARIFVLKSCG 295
           ASGAV   A+   S  +FV+KS G
Sbjct: 21  ASGAVVSLAANDVSGELFVIKSAG 44


>10_01_0160 - 1812213-1813790
          Length = 525

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 212 IAVSASGAVTITASGTASARIFVLKSCG 295
           I   ASGA    A+  AS  +FV+KS G
Sbjct: 19  IGHGASGATVSLAADDASGELFVVKSAG 46


>02_02_0368 +
           9501965-9501983,9502189-9502257,9502902-9503257,
           9503354-9503514,9503872-9504032,9504094-9504275
          Length = 315

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 294 PQDLSTKILADAVPEAVIVTAPEAETAITTGSPTVDL 184
           P D + K++   V    I +A +AETA+  G+  + +
Sbjct: 58  PNDGAAKLIQPVVKMCGITSAKDAETALEAGAKLIGM 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,533,546
Number of Sequences: 37544
Number of extensions: 65944
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)