Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a10
         (297 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1861|AAF48238.3|  625|Drosophila melanogaster CG12723-P...    30   0.60 
AE013599-1121|AAO41424.2|  668|Drosophila melanogaster CG12052-P...    27   5.6  
AB107347-1|BAC67652.1|  668|Drosophila melanogaster Lola protein...    27   5.6  
AB107327-1|BAC67632.1|  668|Drosophila melanogaster Lola protein...    27   5.6  
AB107307-1|BAC67612.1|  668|Drosophila melanogaster Lola protein...    27   5.6  
AB107287-1|BAC67592.1|  668|Drosophila melanogaster Lola protein...    27   5.6  

>AE014298-1861|AAF48238.3|  625|Drosophila melanogaster CG12723-PA
           protein.
          Length = 625

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 285 LSTKILADAVPEAVIVTAPEAETAITTG 202
           L  + +A++ P A +VT PE E  +TTG
Sbjct: 57  LQEESVAESAPTASVVTEPETEVEVTTG 84


>AE013599-1121|AAO41424.2|  668|Drosophila melanogaster CG12052-PO,
           isoform O protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  NQSCSGFCSDSFYGFRFNNHN 150
           N   S   SD FYG+  NN+N
Sbjct: 473 NPGSSANASDEFYGYHLNNNN 493


>AB107347-1|BAC67652.1|  668|Drosophila melanogaster Lola protein
           isoform P protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  NQSCSGFCSDSFYGFRFNNHN 150
           N   S   SD FYG+  NN+N
Sbjct: 473 NPGSSANASDEFYGYHLNNNN 493


>AB107327-1|BAC67632.1|  668|Drosophila melanogaster Lola protein
           isoform P protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  NQSCSGFCSDSFYGFRFNNHN 150
           N   S   SD FYG+  NN+N
Sbjct: 473 NPGSSANASDEFYGYHLNNNN 493


>AB107307-1|BAC67612.1|  668|Drosophila melanogaster Lola protein
           isoform P protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  NQSCSGFCSDSFYGFRFNNHN 150
           N   S   SD FYG+  NN+N
Sbjct: 473 NPGSSANASDEFYGYHLNNNN 493


>AB107287-1|BAC67592.1|  668|Drosophila melanogaster Lola protein
           isoform P protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  NQSCSGFCSDSFYGFRFNNHN 150
           N   S   SD FYG+  NN+N
Sbjct: 473 NPGSSANASDEFYGYHLNNNN 493


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,196,372
Number of Sequences: 53049
Number of extensions: 124916
Number of successful extensions: 313
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 527894775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)