Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a10
(297 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 28 1.0
Z99288-1|CAB16545.2| 339|Caenorhabditis elegans Hypothetical pr... 27 1.8
L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid desa... 26 5.6
AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical ... 26 5.6
Z66565-3|CAA91479.1| 177|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z72508-8|CAA96640.2| 366|Caenorhabditis elegans Hypothetical pr... 25 9.7
U97012-6|AAK39147.1| 337|Caenorhabditis elegans Serpentine rece... 25 9.7
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 25 9.7
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 25 9.7
AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical ... 25 9.7
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 124 YGFRFNNHNFFCNYFWLNSF*VNCRRSCGYSSFSLWG 234
YG+ +NN+ + NY+ NS+ RSC S+S G
Sbjct: 311 YGYGYNNNYYSGNYYCCNSY-----RSCWRQSYSCSG 342
>Z99288-1|CAB16545.2| 339|Caenorhabditis elegans Hypothetical
protein ZK262.1 protein.
Length = 339
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 94 SCSGFCSDSFYGFRFNNHNFFCNYFWL 174
SC F + S G N N FCN+FW+
Sbjct: 107 SCQ-FLTISIAGIFENRFNTFCNFFWV 132
>L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid
desaturase protein.
Length = 402
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 112 SDSFYGFRFN-NHNFFCNYFWLN 177
SD+ YG++ N++FF + W N
Sbjct: 353 SDTQYGYKSQVNYDFFARFLWFN 375
>AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical
protein Y67H2A.8 protein.
Length = 402
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 112 SDSFYGFRFN-NHNFFCNYFWLN 177
SD+ YG++ N++FF + W N
Sbjct: 353 SDTQYGYKSQVNYDFFARFLWFN 375
>Z66565-3|CAA91479.1| 177|Caenorhabditis elegans Hypothetical
protein T04F8.3 protein.
Length = 177
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 109 CSDSFYGFRFNNHNFFCNYFWLNSF 183
CS Y F F +F +YF+ NSF
Sbjct: 134 CSILEYNFFFLQFSFLSSYFYSNSF 158
>Z72508-8|CAA96640.2| 366|Caenorhabditis elegans Hypothetical
protein F28H7.9 protein.
Length = 366
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 190 NCRRSCGYSSFSLWGCYNYSFRYSICENFRT 282
N R YS+ G Y+ S R+ + EN +T
Sbjct: 197 NIRLHNSYSTLEHHGLYSLSERFQVSENIKT 227
>U97012-6|AAK39147.1| 337|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 15 protein.
Length = 337
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 148 NFFCNYFWLNSF*VNCRRSCGYSSFSLWGCY-NYSFRYSI 264
N FC YF L++ + + SLW + ++ FRY I
Sbjct: 83 NGFCTYFGLSTCAIGLSMYIHTLTHSLWSLFISFVFRYLI 122
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 261 AVPEAVIVTAPEAETAITTGSPT 193
A+P VIVT P + T+ TT + T
Sbjct: 306 ALPPRVIVTIPPSTTSTTTSTTT 328
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 261 AVPEAVIVTAPEAETAITTGSPT 193
A+P VIVT P + T+ TT + T
Sbjct: 381 ALPPRVIVTIPPSTTSTTTSTTT 403
>AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical
protein Y57E12B.3 protein.
Length = 684
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 121 FYGFR-FNNHNFFC--NYFWLNSF*VNCRRSCGYSSFSLWGCYNYSFRYSICENFRT 282
++GF+ F NHN FC F L++ C S + F +++CEN T
Sbjct: 64 YFGFKLFRNHNHFCIRRQFVLHA----CSDSTDFVEMKSLLLLFLLFLHTLCENVTT 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,370,287
Number of Sequences: 27780
Number of extensions: 72447
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -