Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a08
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 95 7e-21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 87 2e-18
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 54 1e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 50 4e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 3e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 45 8e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 45 1e-05
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 44 1e-05
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 42 1e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 41 1e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 5e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 39 5e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 38 0.001
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 38 0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 37 0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.004
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 36 0.006
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 36 0.006
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 35 0.008
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 32 0.059
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 32 0.077
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 31 0.10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 31 0.18
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.9
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 95.1 bits (226), Expect = 7e-21
Identities = 48/82 (58%), Positives = 57/82 (69%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+LITTDLLARGIDVQQVS VINYDLP+NRENY INFVT D R +
Sbjct: 311 ILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMM 370
Query: 444 KDIEDFYHTSIVEMPSDVANLI 379
++IE FY+T I EMP ++A+LI
Sbjct: 371 REIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 87.0 bits (206), Expect = 2e-18
Identities = 44/82 (53%), Positives = 53/82 (64%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VLI TD+ ARGIDVQQVS VINYDLP+NRENY INFVT D R L
Sbjct: 313 VLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRIL 372
Query: 444 KDIEDFYHTSIVEMPSDVANLI 379
+DIE +Y T I EMP ++ +++
Sbjct: 373 RDIEQYYSTVIDEMPMNIGDMV 394
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 54.4 bits (125), Expect = 1e-08
Identities = 32/88 (36%), Positives = 45/88 (51%)
Frame = -1
Query: 621 LITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALK 442
L+ +DLL RGID+Q V+ VIN+D P N E Y I+F++ ADR L
Sbjct: 335 LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLY 394
Query: 441 DIEDFYHTSIVEMPSDVANLI*GAYIFP 358
IE+ T I +P + + Y+FP
Sbjct: 395 RIENELGTEIQPIPPSIDPSL---YVFP 419
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF-VTEADRRA 448
+ + TD+ RGID+++V+ VINYD+P + ++Y I F +E D +
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQI 407
Query: 447 LKDIEDFYHTSIVEMPSDV 391
L I++ + +I E+P ++
Sbjct: 408 LDKIQERFEVNITELPDEI 426
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 46.4 bits (105), Expect = 3e-06
Identities = 29/81 (35%), Positives = 38/81 (46%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VLI TDLLARGID V VIN+D P + +Y + F T+ D +
Sbjct: 341 VLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYI 400
Query: 444 KDIEDFYHTSIVEMPSDVANL 382
K I +S E+P+ V L
Sbjct: 401 KLIAGVMRSSGCEVPNWVMAL 421
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 45.2 bits (102), Expect = 8e-06
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ TD+ +RG+D+ V VIN+DLP + ++Y I+ VTE D +
Sbjct: 311 ILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLV 370
Query: 444 KDIEDFYHTSIVE 406
IED T + E
Sbjct: 371 HAIEDRVGTKLSE 383
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNR------ENYXXXXXXXXXXXXXXXXINFVTE 463
VL+TT+++ARGIDV QV+ V+NYD+P ++ + Y INFV +
Sbjct: 405 VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 464
Query: 462 ADR-RALKDIEDFYHTSIVEMPSD 394
+ I++++ I +P+D
Sbjct: 465 KKSWEEMNAIQEYFQRPITRVPTD 488
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VLI T ++ARG+DV+ + V+NYD P++ E+Y + F+T +
Sbjct: 721 VLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYA 780
Query: 444 KDIEDFYHTSIVEMPSDVANL 382
DI S +P ++ L
Sbjct: 781 VDIAKALKMSKQPVPKELQTL 801
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+++ TD+ +RGIDV+ ++ V NYD P N E+Y
Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDY 453
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -1
Query: 621 LITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALK 442
L+ TD+ +RGID++ + VINY+ P+ E Y I E DR+ LK
Sbjct: 558 LLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLK 617
Query: 441 DI 436
+
Sbjct: 618 GV 619
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.1 bits (87), Expect = 5e-04
Identities = 13/25 (52%), Positives = 22/25 (88%)
Frame = -1
Query: 603 LARGIDVQQVSCVINYDLPSNRENY 529
+ARG+D + V+CV+N+D+PSN ++Y
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSY 410
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 39.1 bits (87), Expect = 5e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = -1
Query: 621 LITTDLLARGIDVQQVSCVINYDLPSNRENY 529
L+ TD+ ARG+D+ V VINYD+P++ + Y
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAY 369
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+L+ TD+ RGID+ VS V+NY++ + E+Y
Sbjct: 569 ILVATDIAGRGIDIPNVSLVLNYNMAKSIEDY 600
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ TD+ ARG+D+ V V+ YD P + ++Y I F+ + +
Sbjct: 499 ILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYI 558
Query: 444 KDIEDFYHTSIVEMPSDVANLI 379
++ +I+E P+ + L+
Sbjct: 559 NLLKSSVSANILEQPNGPSGLL 580
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.1 bits (82), Expect = 0.002
Identities = 13/32 (40%), Positives = 25/32 (78%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+++ T + +RG+D+ V+ VINYDLP++ ++Y
Sbjct: 483 IMVATAVASRGLDIPNVTHVINYDLPTDIDDY 514
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+L+ +DL+ARGIDV VINYD P + +Y
Sbjct: 490 LLVCSDLMARGIDVANTQNVINYDPPLSVRSY 521
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VL+ TD+ ARGID+ V+ VI+Y +P + Y
Sbjct: 442 VLVCTDVAARGIDIPSVTHVIHYHVPHTADMY 473
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VL+ TD+ ARG+D+ +V VIN P E+Y
Sbjct: 469 VLVATDVAARGLDIPKVQLVINVTFPLTIEDY 500
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 35.1 bits (77), Expect = 0.008
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ TD+ +RGID+ ++ VINYD P + + + V D L
Sbjct: 399 LLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYL 458
Query: 444 KDIEDFYHTSIVEMPSDV 391
D++ F + +V V
Sbjct: 459 LDLQLFLNRPLVTSSKQV 476
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 32.3 bits (70), Expect = 0.059
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+L+ T++ ARG+D+ V ++ YD P + +Y
Sbjct: 389 ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDY 420
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 31.9 bits (69), Expect = 0.077
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VL TD++ARG+D V VI D P + + Y
Sbjct: 338 VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 31.5 bits (68), Expect = 0.10
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+L TD++ARG+D ++ V+ PSN ++Y
Sbjct: 346 ILFATDVVARGMDFPNITQVVQITGPSNTDDY 377
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 30.7 bits (66), Expect = 0.18
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VL TTD+ +RG+D+ V V+ D P + +++
Sbjct: 312 VLFTTDIASRGLDIPNVDFVLQLDPPLDPKSF 343
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 328 AIERRTQNINRKNVGAL 378
A+E+ QNINRK+V A+
Sbjct: 291 AVEKILQNINRKDVNAI 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,901
Number of Sequences: 5004
Number of extensions: 51333
Number of successful extensions: 118
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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