Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a08
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 99 3e-21
U13876-4|AAX88826.1| 115|Caenorhabditis elegans Initiation fact... 99 3e-21
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 99 3e-21
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 81 5e-16
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 81 5e-16
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 60 1e-09
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 56 2e-08
Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 55 5e-08
U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 55 5e-08
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 45 5e-05
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 44 9e-05
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 43 2e-04
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 42 5e-04
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 42 5e-04
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 42 5e-04
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 42 5e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 42 5e-04
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 40 0.001
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 40 0.001
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 40 0.001
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 39 0.003
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.004
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 38 0.004
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 38 0.004
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.004
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 38 0.004
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 38 0.004
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 38 0.004
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 38 0.004
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 38 0.004
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 38 0.004
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 38 0.008
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 36 0.018
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 36 0.018
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 36 0.031
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 33 0.17
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 33 0.22
AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical ... 31 0.67
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 31 0.67
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 30 1.2
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 30 1.5
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 30 1.5
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 29 3.6
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 29 3.6
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 27 8.2
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 27 8.2
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 98.7 bits (235), Expect = 3e-21
Identities = 51/82 (62%), Positives = 56/82 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VLITTD+LARGIDVQQVS VINYDLPSNRENY INFVTE D R L
Sbjct: 321 VLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQL 380
Query: 444 KDIEDFYHTSIVEMPSDVANLI 379
K+IE +Y T I EMP +A+LI
Sbjct: 381 KEIESYYTTQIEEMPESIADLI 402
>U13876-4|AAX88826.1| 115|Caenorhabditis elegans Initiation factor
protein 1, isoformb protein.
Length = 115
Score = 98.7 bits (235), Expect = 3e-21
Identities = 51/82 (62%), Positives = 56/82 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VLITTD+LARGIDVQQVS VINYDLPSNRENY INFVTE D R L
Sbjct: 34 VLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQL 93
Query: 444 KDIEDFYHTSIVEMPSDVANLI 379
K+IE +Y T I EMP +A+LI
Sbjct: 94 KEIESYYTTQIEEMPESIADLI 115
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 98.7 bits (235), Expect = 3e-21
Identities = 51/82 (62%), Positives = 56/82 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VLITTD+LARGIDVQQVS VINYDLPSNRENY INFVTE D R L
Sbjct: 321 VLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQL 380
Query: 444 KDIEDFYHTSIVEMPSDVANLI 379
K+IE +Y T I EMP +A+LI
Sbjct: 381 KEIESYYTTQIEEMPESIADLI 402
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 81.4 bits (192), Expect = 5e-16
Identities = 42/82 (51%), Positives = 53/82 (64%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VLI+TD+ ARG+DV QVS VINYDLP+NRE Y INFV + D R L
Sbjct: 318 VLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRIL 377
Query: 444 KDIEDFYHTSIVEMPSDVANLI 379
+DIE +Y T I EMP ++A++I
Sbjct: 378 RDIEQYYSTQIDEMPMNIADII 399
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 81.4 bits (192), Expect = 5e-16
Identities = 42/82 (51%), Positives = 53/82 (64%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VLI+TD+ ARG+DV QVS VINYDLP+NRE Y INFV + D R L
Sbjct: 318 VLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRIL 377
Query: 444 KDIEDFYHTSIVEMPSDVANLI 379
+DIE +Y T I EMP ++A++I
Sbjct: 378 RDIEQYYSTQIDEMPMNIADII 399
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VL+TTDL+ARG+++++ S +INYD+ N ENY I+F TE D L
Sbjct: 280 VLVTTDLMARGMNIRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDL 338
Query: 444 KDIEDFYHTSIVEMP 400
K IE+ Y T I EMP
Sbjct: 339 KKIENHYSTRIEEMP 353
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/77 (38%), Positives = 38/77 (49%)
Frame = -1
Query: 621 LITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALK 442
L+ +DLL RGID+Q V+ VIN+D P N E Y IN +T DR L+
Sbjct: 334 LVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLR 393
Query: 441 DIEDFYHTSIVEMPSDV 391
IE T I +P V
Sbjct: 394 RIEQELRTRIEPIPKTV 410
>Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical
protein C26D10.2a protein.
Length = 425
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVT-EADRRA 448
+L+ TDL RG+D+++V+ V NYD+P + ++Y I FV+ E D +
Sbjct: 336 ILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKT 395
Query: 447 LKDIEDFYHTSIVEMPS--DVANLI*G 373
L ++D + SI E+P DV+ I G
Sbjct: 396 LNSVQDRFDISITELPEKIDVSTYIEG 422
>U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA
helicase protein.
Length = 417
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVT-EADRRA 448
+L+ TDL RG+D+++V+ V NYD+P + ++Y I FV+ E D +
Sbjct: 328 ILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKT 387
Query: 447 LKDIEDFYHTSIVEMPS--DVANLI*G 373
L ++D + SI E+P DV+ I G
Sbjct: 388 LNSVQDRFDISITELPEKIDVSTYIEG 414
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VL+ T+LL RG+D+ V VINYDLP++ +Y + + T+AD + +
Sbjct: 428 VLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADMKYI 487
Query: 444 KDIEDFYHTSIVEMP 400
K I S ++P
Sbjct: 488 KSIATVIRQSGFDVP 502
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLP 547
VLITT++ ARGIDV QVS VINYDLP
Sbjct: 508 VLITTNVFARGIDVAQVSVVINYDLP 533
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLP 547
VLITT++ ARGIDV QVS VINYDLP
Sbjct: 533 VLITTNVFARGIDVAQVSVVINYDLP 558
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLP 547
VLITT++ ARGIDV QVS VINYDLP
Sbjct: 917 VLITTNVFARGIDVAQVSVVINYDLP 942
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ TD+ ARG+D+ V VINYD+PS ++Y I VT+ D A
Sbjct: 336 ILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAY 395
Query: 444 KDIE 433
+ IE
Sbjct: 396 QKIE 399
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+++ TD+ ARG+DV + VINYD P+N E+Y F T +
Sbjct: 429 IMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKA 488
Query: 444 KDI 436
KD+
Sbjct: 489 KDL 491
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ TD+ RGIDV+ VS V+NYD+ + E+Y I F+T D
Sbjct: 626 ILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVY 685
Query: 444 KDIED-FYHTSIVEMPSDVAN 385
D++ + + P ++AN
Sbjct: 686 FDLKQVLVESPVSSCPPELAN 706
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ T + ARG+D+ V VINYDLPS+ + Y +F + +R
Sbjct: 480 ILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIA 539
Query: 444 KDIEDFYHTSIVEMP 400
+++ D + E+P
Sbjct: 540 RELMDLIVEANQELP 554
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSN 541
VLI +D+LARG D+ +V CVINY+LP++
Sbjct: 452 VLICSDVLARGTDLNKVDCVINYNLPAD 479
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ TDL +RGIDV ++ V+NYD P + E Y ++F+ DR
Sbjct: 391 ILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNF 450
Query: 444 KDIEDFYHTSIVEMPSDV 391
+ + S E+P +
Sbjct: 451 EGLIQILEKSEQEVPDQL 468
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
VL++TDL +RG+D++ V VIN ++P + + Y I+ V E +R+ L
Sbjct: 470 VLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLL 529
Query: 444 KDI 436
K+I
Sbjct: 530 KEI 532
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ T + ARG+D+ V VINYDLP + + Y +F + +R
Sbjct: 451 ILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIG 510
Query: 444 KDIEDFYHTSIVEMP 400
+D+++ S E+P
Sbjct: 511 RDLKNLIVESNQEVP 525
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ T + ARG+D+ V VINYDLP + + Y +F + +R
Sbjct: 435 ILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIG 494
Query: 444 KDIEDFYHTSIVEMP 400
+D+++ S E+P
Sbjct: 495 RDLKNLIVESNQEVP 509
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ T + ARG+D+ V VINYDLP + + Y +F + +R
Sbjct: 432 ILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIG 491
Query: 444 KDIEDFYHTSIVEMP 400
+D+++ S E+P
Sbjct: 492 RDLKNLIVESNQEVP 506
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLP 547
+L+TTDLL+RGIDV + VIN+DLP
Sbjct: 699 LLVTTDLLSRGIDVSDLDRVINFDLP 724
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVT-EADRRA 448
VL+ TD+ ++G+D Q + VIN+D+P + ENY F+ +++
Sbjct: 494 VLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSV 553
Query: 447 LKDIEDFYHTSIVEMP 400
L D++ + E+P
Sbjct: 554 LSDLKQLLAEAGQELP 569
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEAD 457
VLI T ++ RG+D++ V VINYD+P+N ++Y +F++ AD
Sbjct: 616 VLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLAD 671
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEAD 457
VLI T ++ RG+D++ V VINYD+P+N ++Y +F++ AD
Sbjct: 616 VLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLAD 671
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VL+ T + ARG+DV+ + V+NYD P++ E+Y
Sbjct: 605 VLVATSVAARGLDVKNLILVVNYDCPNHYEDY 636
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VLI T + RG+D++ V VINYD+P N ++Y
Sbjct: 659 VLIATAVAERGLDIKGVDHVINYDMPDNIDDY 690
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VLI T + RG+D++ V VINYD+P N ++Y
Sbjct: 870 VLIATAVAERGLDIKGVDHVINYDMPDNIDDY 901
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VLI T + RG+D++ V VINYD+P N ++Y
Sbjct: 870 VLIATAVAERGLDIKGVDHVINYDMPDNIDDY 901
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VLI T + RG+D++ V VINYD+P N ++Y
Sbjct: 659 VLIATAVAERGLDIKGVDHVINYDMPDNIDDY 690
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+L+++DL ARGID V+ V+N D +N E Y
Sbjct: 312 ILVSSDLTARGIDADNVNLVVNIDAAANEETY 343
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+L+++DL ARGID V+ V+N D +N E Y
Sbjct: 312 ILVSSDLTARGIDADNVNLVVNIDAAANEETY 343
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VLI T + RG+D++ V VINYD+P N ++Y
Sbjct: 659 VLIATAVAERGLDIKGVDHVINYDMPDNIDDY 690
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
V+I TD+ +RG+D+ V V+N+++P + Y ++FVT+ D L
Sbjct: 390 VIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELL 449
Query: 444 KDIEDFYHTSIVEM 403
+ +E + E+
Sbjct: 450 QAVEQVIGKKLDEL 463
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
V+I TD+ +RG+D+ V V+N+++P + Y ++FVT+ D L
Sbjct: 390 VIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELL 449
Query: 444 KDIEDFYHTSIVEM 403
+ +E + E+
Sbjct: 450 QAVEQVIGKKLDEL 463
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VLI T + RG+D++ V VINYD+P N ++Y
Sbjct: 870 VLIATAVAERGLDIKGVDHVINYDMPDNIDDY 901
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSN 541
V+I+TD++ARGID+ + VI +DLP +
Sbjct: 312 VMISTDVMARGIDISDIDWVIQFDLPKH 339
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VL+ TD+ ARG+D+Q + VI+Y +P E Y
Sbjct: 326 VLLATDVAARGLDIQGIDHVIHYQVPKKVEIY 357
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VL+ TD+ ARG+D+Q + VI+Y +P E Y
Sbjct: 493 VLLATDVAARGLDIQGIDHVIHYQVPKKVEIY 524
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRAL 445
+L+ TD+ ARG+D+ ++ VIN+D+ + + + VTE D +
Sbjct: 563 ILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMV 622
Query: 444 KDIEDFYHTSIVEMPSDVANL 382
+ + E+P + +L
Sbjct: 623 GHLVKNLESVSQEVPKPLMDL 643
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
VLI TD+ +RG+D + + VI D P+ ++Y
Sbjct: 375 VLIATDVASRGLDFEHIDWVIQVDCPAQIDDY 406
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -1
Query: 621 LITTDLLARGIDVQQVSCVINYDLPSNRENY 529
L+ +D++ARG+DVQ V VI+ LP + Y
Sbjct: 559 LVCSDVVARGLDVQGVPFVISVTLPDEKSMY 589
>AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical
protein C24H12.4b protein.
Length = 567
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 603 LARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIED 430
++RGID VS V+N+D P + Y ++F ++R L+ I++
Sbjct: 368 VSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQE 425
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 603 LARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIED 430
++RGID VS V+N+D P + Y ++F ++R L+ I++
Sbjct: 435 VSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQE 492
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
+L+ TD+ ARG+D+ V ++ YD Y
Sbjct: 367 ILLCTDVAARGLDIPAVDWIVQYDPTDEPREY 398
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLP 547
+L+ TD+ ARG+D+ + VIN P
Sbjct: 318 ILVVTDVAARGVDIPLLDTVINLHFP 343
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLP 547
+L+ TD+ ARG+D+ + VIN P
Sbjct: 318 ILVVTDVAARGVDIPLLDTVINLHFP 343
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
V++ T GID V VI++ LP + ENY
Sbjct: 362 VIVATVAFGMGIDKPNVRFVIHHSLPKSIENY 393
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
V++ T GID V VI++ LP + ENY
Sbjct: 385 VIVATVAFGMGIDKPNVRFVIHHSLPKSIENY 416
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
F48E3.3 protein.
Length = 1493
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = -3
Query: 139 APFPHRPFCHLHRGLIG--FWR-GYF-NHKSTRRK*HCNFSXLYII 14
AP+ + PFC + + G FW+ GY+ NH + RR + S LY+I
Sbjct: 1324 APYGYVPFCESRKEMDGFRFWKQGYWANHLAGRR---YHISALYVI 1366
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = -1
Query: 621 LITTDLLARGIDVQQVSCVINYDLP 547
++ +++ ARG+++ + V+NYD+P
Sbjct: 1056 MVASNVCARGLNIAGLDHVVNYDMP 1080
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line helicase
protein 4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = -1
Query: 621 LITTDLLARGIDVQQVSCVINYDLP 547
++ +++ ARG+++ + V+NYD+P
Sbjct: 1056 MVASNVCARGLNIAGLDHVVNYDMP 1080
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,079
Number of Sequences: 27780
Number of extensions: 288032
Number of successful extensions: 656
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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