Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a08
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       40   2e-05
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.60 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.60 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.60 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = -1

Query: 624 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 529
           +L+ T + ARG+D++ VS VINYDLP   + Y
Sbjct: 504 ILVATAVAARGLDIKNVSHVINYDLPKGIDEY 535


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 417 SIVEMPSDVANLI*GAYIFPIYILCPAFYCDI 322
           +I+ MP +VA L+ G +IF I++      CD+
Sbjct: 86  AILVMPFNVAYLLLGKWIFGIHLCKLWLTCDV 117


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 417 SIVEMPSDVANLI*GAYIFPIYILCPAFYCDI 322
           +I+ MP +VA L+ G +IF I++      CD+
Sbjct: 86  AILVMPFNVAYLLLGKWIFGIHLCKLWLTCDV 117


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 417 SIVEMPSDVANLI*GAYIFPIYILCPAFYCDI 322
           +I+ MP +VA L+ G +IF I++      CD+
Sbjct: 86  AILVMPFNVAYLLLGKWIFGIHLCKLWLTCDV 117


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 10  TILCTXWKSYNVIS 51
           TI+C  W S++V+S
Sbjct: 111 TIMCDLWVSFDVLS 124


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 309 HTPYKYRNRTQDTEYKSEKCRRLR 380
           H PY+ + + Q  + + ++ RRLR
Sbjct: 160 HRPYQQQQQQQQRQQQRQEERRLR 183


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 395 MWPTSSKAPTFFRFIFCVL 339
           MW TS + P FF     +L
Sbjct: 407 MWSTSLRDPVFFSIYKTIL 425


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 395 MWPTSSKAPTFFRFIFCVL 339
           MW TS + P FF     +L
Sbjct: 407 MWSTSLRDPVFFSIYKTIL 425


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 395 MWPTSSKAPTFFRFIFCVL 339
           MW TS + P FF     +L
Sbjct: 33  MWSTSLRDPVFFSIYKTIL 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,749
Number of Sequences: 438
Number of extensions: 3858
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)