Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a07
         (638 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U19731-1|AAB60231.1|  400|Drosophila melanogaster phyllopod prot...    28   9.3  
U19722-1|AAA65733.1|  400|Drosophila melanogaster phyllopod prot...    28   9.3  
L38294-1|AAA66168.1|  400|Drosophila melanogaster protein ( Dros...    28   9.3  
BT022488-1|AAY54904.1|  446|Drosophila melanogaster IP11787p pro...    28   9.3  
AY075531-1|AAL68338.1|  400|Drosophila melanogaster RH04401p pro...    28   9.3  
AE014297-1215|AAF54567.2|  446|Drosophila melanogaster CG14694-P...    28   9.3  
AE013599-1895|AAF58245.1|  400|Drosophila melanogaster CG10108-P...    28   9.3  

>U19731-1|AAB60231.1|  400|Drosophila melanogaster phyllopod
           protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 140 RPNAICQTATVLCREPPNH*VITDVAASITST 45
           R NAIC+   V  R  P   ++ DVAA+ T T
Sbjct: 199 RSNAICKVECVAPRRKPVERLVKDVAATATPT 230


>U19722-1|AAA65733.1|  400|Drosophila melanogaster phyllopod
           protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 140 RPNAICQTATVLCREPPNH*VITDVAASITST 45
           R NAIC+   V  R  P   ++ DVAA+ T T
Sbjct: 195 RSNAICKVECVAPRRKPVERLVKDVAATATPT 226


>L38294-1|AAA66168.1|  400|Drosophila melanogaster protein (
           Drosophila melanogasterphyllopod mRNA. ).
          Length = 400

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 140 RPNAICQTATVLCREPPNH*VITDVAASITST 45
           R NAIC+   V  R  P   ++ DVAA+ T T
Sbjct: 195 RSNAICKVECVAPRRKPVERLVKDVAATATPT 226


>BT022488-1|AAY54904.1|  446|Drosophila melanogaster IP11787p
           protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 6   TAVLXXTMAVEXTRGSYRSGNISYYSMVRG-FPAQYRGRLT 125
           T  L    AVE   G Y++G ++YYS +      QY  R+T
Sbjct: 92  TTTLSGLQAVEVFYGFYQAGEVAYYSYIYAKVDKQYYPRVT 132


>AY075531-1|AAL68338.1|  400|Drosophila melanogaster RH04401p
           protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 140 RPNAICQTATVLCREPPNH*VITDVAASITST 45
           R NAIC+   V  R  P   ++ DVAA+ T T
Sbjct: 199 RSNAICKVECVAPRRKPVERLVKDVAATATPT 230


>AE014297-1215|AAF54567.2|  446|Drosophila melanogaster CG14694-PA
           protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 6   TAVLXXTMAVEXTRGSYRSGNISYYSMVRG-FPAQYRGRLT 125
           T  L    AVE   G Y++G ++YYS +      QY  R+T
Sbjct: 92  TTTLSGLQAVEVFYGFYQAGEVAYYSYIYAKVDKQYYPRVT 132


>AE013599-1895|AAF58245.1|  400|Drosophila melanogaster CG10108-PA
           protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 140 RPNAICQTATVLCREPPNH*VITDVAASITST 45
           R NAIC+   V  R  P   ++ DVAA+ T T
Sbjct: 199 RSNAICKVECVAPRRKPVERLVKDVAATATPT 230


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,790,651
Number of Sequences: 53049
Number of extensions: 467862
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)