Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a06
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   4.3  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.7  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   7.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   10.0 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   10.0 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   10.0 

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 633  VSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPL 535
            V+P Q   P   T APAP S P      PP P+
Sbjct: 1455 VAPVQPKAPGMVTNAPAPSSAPA-----PPAPV 1482


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 633 VSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPLQVFF 523
           +S   S  PS+ +  PAP+S   T   +P T LQ  F
Sbjct: 178 LSVAASPNPSTPSNGPAPVSTTATPSRNPVTRLQRIF 214


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 311 INIVVYTFPYRKVSGVPQNVIILSKN*RQTHKS 213
           IN+    F Y  +SG+  N  +LSK+ R  + +
Sbjct: 745 INVYKIHFQYNNISGLADNYTLLSKHDRAMYNN 777


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 335 TLS*NIKCINIVVY--TFPYRKVSGVPQNVIILSKN 234
           TLS ++KC+N V Y    PY+  S    N + +  N
Sbjct: 465 TLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSN 500


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 552 HPPTPLQVFFILFTIGHNFHR 490
           +PP PL V  I F IGH + +
Sbjct: 504 NPPKPLTVLDIYFQIGHVYEQ 524


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 618 SSGPSSFTAAPAPLSVPVTAPCHPPTP 538
           S+ PS    APA   +P +AP  PP P
Sbjct: 434 SAPPSLPMGAPAAPPLPPSAPIAPPLP 460


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 633 VSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPL 535
           V PT SS P + T      SVP T+     TPL
Sbjct: 413 VPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPL 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,562
Number of Sequences: 5004
Number of extensions: 42432
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)