Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a06
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 33 0.28
10_08_1008 - 22222051-22222377,22222479-22222640,22223179-222233... 31 0.64
12_02_0306 + 17307166-17309091 31 0.84
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 31 1.1
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 30 1.5
02_05_0387 - 28535947-28536130,28538615-28538788,28538824-285390... 30 1.5
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 29 2.6
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 29 2.6
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 29 2.6
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 29 3.4
03_06_0385 + 33552382-33552538,33553059-33553559,33553633-33554156 29 3.4
12_02_0756 + 22839673-22839870,22839961-22842194,22842280-228425... 29 4.5
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 29 4.5
05_05_0017 + 21546434-21546841 29 4.5
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 29 4.5
05_06_0078 - 25412770-25413852 28 5.9
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 28 7.8
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 28 7.8
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 627 PTQSSGPSSFTAAPAPLSVPVTAPCHPPTPLQVF 526
PT P+S + PAP P AP PPTP F
Sbjct: 97 PTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKF 130
>10_08_1008 -
22222051-22222377,22222479-22222640,22223179-22223310,
22224556-22224608,22224713-22225256
Length = 405
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 636 EVSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTP 538
+VSP + P+ AAP P + P P PP P
Sbjct: 5 DVSPLVTVPPAPAAAAPPPAAAPAPPPSQPPPP 37
>12_02_0306 + 17307166-17309091
Length = 641
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +2
Query: 530 TWSGVGGWQGAVTG---TESGAGAAVNDD---GPEDCVGDTSVG 643
T GVG W GA G TE G G D G D VG+T +G
Sbjct: 477 TLVGVGAWAGADVGSSLTEGGGGTLCGGDARGGARDGVGETFIG 520
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 636 EVSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPL 535
E +P PS AAP P V V P PP PL
Sbjct: 2 EATPISVKPPSPVAAAPPPPPVQVPVPPPPPPPL 35
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 536 SGVGGWQGAVTGTESGAGAAVNDDGPEDCVGDT 634
SG GG G G G G + PE+CV +T
Sbjct: 455 SGSGGRHGGSGGRYGGGGGSSGSSRPEECVSET 487
>02_05_0387 -
28535947-28536130,28538615-28538788,28538824-28539023,
28539090-28539234,28539403-28539509
Length = 269
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 36 VYLHQISHSVPFLNFHNKLFIRL 104
VYLH IS++ P ++F+NK+ +L
Sbjct: 153 VYLHVISYNQPAISFYNKMLFKL 175
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 618 SSGPSSFTAAPAPLSVPVT-APCHPPTP 538
SS PSS AAPAP S P +P HPP+P
Sbjct: 467 SSTPSS-AAAPAPPSPPEPPSPRHPPSP 493
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 618 SSGPSSFTAAPAPLSVPVT-APCHPPTP 538
SS PSS AAPAP S P +P HPP+P
Sbjct: 513 SSTPSS-AAAPAPPSPPEPPSPRHPPSP 539
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 108 INVHATLILTRYQHISKMYY*FSHELVLT*YLRDVTF-VCLPLIFRQNDNILWYS*YFTI 284
I VHA I +RY +IS++Y SH VL Y TF +CLP+I+ + + + +I
Sbjct: 69 IAVHA--IGSRYPNISRIYSVISHFYVL--YAH--TFKLCLPIIYSLFEGL--HDHVISI 120
Query: 285 GKCVN 299
GK VN
Sbjct: 121 GKSVN 125
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 630 SPTQSSGPSSFTAAPAPLSVP-VTAPCHPPTP 538
S T SS + TAAPAP S P +P H P+P
Sbjct: 467 SSTPSSSQAMTTAAPAPPSPPEPPSPRHQPSP 498
>03_06_0385 + 33552382-33552538,33553059-33553559,33553633-33554156
Length = 393
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 618 SSGPSSFTAAPAPLSVPVTAPCH-PPTP 538
S+G + AP P+ VP AP H PP P
Sbjct: 21 SAGATLAVKAPVPVPVPAPAPAHAPPQP 48
>12_02_0756 +
22839673-22839870,22839961-22842194,22842280-22842531,
22842612-22842722,22842812-22842893,22843168-22843359
Length = 1022
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 630 SPTQSSGPSSFTAAPAPLSVPVT-APCHPPTP 538
S T SS + APAP S P +P HPP+P
Sbjct: 554 SSTPSSSQAMTATAPAPPSPPEPPSPQHPPSP 585
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 630 SPTQSSGPSSFT--AAPAPLSVPVTAPCHPPTPLQ 532
SPT PS A PL+VP P +PP+P Q
Sbjct: 29 SPTAKPSPSPLNPRATKPPLAVPSPPPPNPPSPPQ 63
>05_05_0017 + 21546434-21546841
Length = 135
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 636 EVSPTQSSGPSSFTAAPAPLSVPVTAPCHPP 544
E P SS P+ T PAP + TAP P
Sbjct: 71 EPVPAPSSSPAGATTTPAPAAPAATAPAPSP 101
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 633 VSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPL 535
+SP P + T P P P P PP P+
Sbjct: 126 ISPPPPPPPPARTPMPTPTPTPTPTPTRPPVPV 158
>05_06_0078 - 25412770-25413852
Length = 360
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 539 GVGGWQGAVTGTESGAGAAVNDDGPEDCVGDTSVGNDG 652
GVGG G +TG G G DG C+ G++G
Sbjct: 219 GVGGSTG-ITGVGGGGGGISGGDGDGGCITGGGGGDEG 255
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 271 QEYHKMLSFCLKIKGKHTKVTSLKY 197
QEY ++ ++CLK+ G+ K+ S ++
Sbjct: 750 QEYERVANYCLKLAGEQEKMVSERW 774
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 630 SPTQSSGPSSFTAAPAPLSVPVTAPCHPPTP 538
+P+ + G S +++ A VP P HPP P
Sbjct: 96 TPSPNGGGGSSSSSTATARVPFHLPIHPPPP 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,592
Number of Sequences: 37544
Number of extensions: 249870
Number of successful extensions: 1305
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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