Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a06
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-3|AAK72309.1|  345|Caenorhabditis elegans Hypothetical ...    31   0.75 
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    30   1.3  
AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF408762-1|AAO27841.1|  242|Caenorhabditis elegans unknown prote...    28   7.0  
AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC084158-18|AAK68583.1|  300|Caenorhabditis elegans Hypothetical...    28   7.0  
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC006777-3|AAK72309.1|  345|Caenorhabditis elegans Hypothetical
           protein Y46H3D.6 protein.
          Length = 345

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 292 HFP-IVKYQEYHKMLSFCLKIKGKH 221
           H P ++KYQE HKM SF L++  +H
Sbjct: 121 HIPKMIKYQEMHKMCSFDLQLVSQH 145


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 636 EVSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPLQ 532
           +V P Q+S PSS T A  PL  P     H P P+Q
Sbjct: 89  DVPPPQTSQPSSDTTA-EPLPSPAATRIHHPIPVQ 122


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 636 EVSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPLQ 532
           +V P Q+S PSS T A  PL  P     H P P+Q
Sbjct: 89  DVPPPQTSQPSSDTTA-EPLPSPAATRIHHPIPVQ 122


>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 618 SSGPSSFTAAPAPLSVPVTAPCHPPTP 538
           ++G +  +A P P   P  AP +PP P
Sbjct: 31  TAGSTDTSATPMPTDAPTAAPANPPPP 57


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 627 PTQSSGPSSFTAAPAPLSVPVTAPC-HPPTP 538
           P  ++     T AP P   PVTAP  +PP P
Sbjct: 208 PPPTTNKEVTTVAPVPKPAPVTAPAPNPPAP 238


>AF408762-1|AAO27841.1|  242|Caenorhabditis elegans unknown protein
           protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 618 SSGPSSFTAAPAPLSVPVTAPCHPPTPLQVF-FILFTIG---HNFHR 490
           ++ PS+ TA PAP   PVTAP  P    Q+   I F IG    NF R
Sbjct: 151 TAAPSTSTA-PAPPKAPVTAPPAPQKSAQLLGKIDFAIGKMRENFDR 196


>AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical
           protein F59H5.1 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 618 SSGPSSFTAAPAPLSVPVTAPCHPPTPLQVF-FILFTIG---HNFHR 490
           ++ PS+ TA PAP   PVTAP  P    Q+   I F IG    NF R
Sbjct: 667 TAAPSTSTA-PAPPKAPVTAPPAPQKSAQLLGKIDFAIGKMRENFDR 712


>AC084158-18|AAK68583.1|  300|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.9 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 627 PTQSSGPSSFTAAPAPLSVPVTAPCHPPT 541
           P    GP  F ++P+P  V   AP  P T
Sbjct: 139 PAPGPGPGPFASSPSPKDVTAEAPTPPKT 167


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 609 PSSFTAAPAPLSVPVTAPCHPPTP 538
           P +  A PAP  +P T PC PP P
Sbjct: 642 PQNCCAPPAPCCLP-TIPCCPPIP 664


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 609 PSSFTAAPAPLSVPVTAPCHPPTP 538
           P +  A PAP  +P T PC PP P
Sbjct: 287 PQNCCAPPAPCCLP-TIPCCPPIP 309


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 609 PSSFTAAPAPLSVPVTAPCHPPTP 538
           P +  A PAP  +P T PC PP P
Sbjct: 239 PQNCCAPPAPCCLP-TIPCCPPIP 261


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
            K08E7.5a protein.
          Length = 1221

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 609  PSSFTAAPAPLSVPVTAPCHPPTP 538
            P +  A PAP  +P T PC PP P
Sbjct: 967  PQNCCAPPAPCCLP-TIPCCPPIP 989


>Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical
           protein F37A8.2 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 615 SGPSSFTAAPAPLSVPVTAPCHPPTPLQVFFILFTIGH 502
           S  SSF  AP+P+ V    PC    P  +   +   GH
Sbjct: 140 SSRSSFGGAPSPVVVKCDGPCKKEFPSNLLSTIGRCGH 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,668,897
Number of Sequences: 27780
Number of extensions: 246365
Number of successful extensions: 884
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)