Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a06
(676 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 23 2.7
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 23 2.7
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 22 4.7
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 8.1
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 8.1
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 8.1
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 8.1
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 8.1
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 8.1
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 8.1
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 8.1
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 21 8.1
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 8.1
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 39 YLHQISHSVPFLNFHNKLFI 98
YLHQ + P LN++N + +
Sbjct: 183 YLHQFAPEQPDLNYYNPVVL 202
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 39 YLHQISHSVPFLNFHNKLFI 98
YLHQ + P LN++N + +
Sbjct: 183 YLHQFAPEQPDLNYYNPVVL 202
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 22.2 bits (45), Expect = 4.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 223 HTKVTSLKYQVSTN 182
HTK LKYQ+S N
Sbjct: 437 HTKNGRLKYQISDN 450
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 8 YNSSHHLVYSLSAPNLAL 61
YN H V++++ PN L
Sbjct: 125 YNGKHSYVHTITVPNKLL 142
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 588 PAPLSVPVTAPCHPPTPL 535
P P+ VP+ PP PL
Sbjct: 122 PIPVPVPIYCGNFPPRPL 139
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 588 PAPLSVPVTAPCHPPTPL 535
P P+ VP+ PP PL
Sbjct: 122 PIPVPVPIYCGNFPPRPL 139
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 588 PAPLSVPVTAPCHPPTPL 535
P P+ VP+ PP PL
Sbjct: 122 PIPVPVPIYCGNFPPRPL 139
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 588 PAPLSVPVTAPCHPPTPL 535
P P+ VP+ PP PL
Sbjct: 122 PIPVPVPIYCGNFPPRPL 139
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 588 PAPLSVPVTAPCHPPTPL 535
P P+ VPV PP P+
Sbjct: 119 PVPVPVPVYCGNFPPRPM 136
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 588 PAPLSVPVTAPCHPPTPL 535
P P+ VPV PP P+
Sbjct: 123 PVPVPVPVYCGNFPPRPM 140
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 588 PAPLSVPVTAPCHPPTPL 535
P P+ VPV PP P+
Sbjct: 123 PVPVPVPVYCGNFPPRPM 140
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 588 PAPLSVPVTAPCHPPTPL 535
P P+ VP+ PP P+
Sbjct: 118 PVPIPVPIYCGNFPPRPM 135
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.4 bits (43), Expect = 8.1
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +2
Query: 110 KCTCNFNTYPLSTH 151
KC +F+++P TH
Sbjct: 168 KCATDFSSWPYDTH 181
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,488
Number of Sequences: 438
Number of extensions: 3024
Number of successful extensions: 31
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -