Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a04
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   0.91 
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    26   3.7  
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    26   4.8  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    25   6.4  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    25   8.5  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    25   8.5  

>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 20/79 (25%), Positives = 30/79 (37%)
 Frame = +1

Query: 253 FEG*RVEHSSAVNSLTSTFCRTSANCVFGXXXXXXXXXXXLGSMLRFFSPEYKHAGTTLT 432
           FEG   E  +++  L S+FC    N               L S L+ ++P          
Sbjct: 83  FEGNESEKETSLQELQSSFCSGIENLQHVEKSARIETYSKLSSFLKIYTPSLPEDPIFPL 142

Query: 433 LNCICFWVLRSAMSWYLEG 489
           LN +C ++L    S   EG
Sbjct: 143 LNQLCNFLLSDRCSNNSEG 161


>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 497 YASPSKYHDIALLKTQKQIQFNVNVVPACLYSGEKKRNI-DPSRALAL 357
           Y SPS+ H  ++ K + ++  N+N+ P  L      ++I + SR + +
Sbjct: 68  YYSPSRTHTSSIKKKRPKLCSNINLTPWSLIDSTSNKSIREQSREMGI 115


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 67   PAVASSHSTPDDVTPNTAFAQPT 135
            PAV++S STP  V P     QPT
Sbjct: 1293 PAVSASISTPPAVVPTVQHPQPT 1315


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 78  SYCRPLHARRALQALDREHRLALNH 4
           S  RP+ ARR +Q  ++E+ +A++H
Sbjct: 93  SLARPIIARRQIQIAEKENCIAVSH 117


>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 584 YAALGILKRSDPPEIWQRHTLAQVIPHPDYASPS 483
           YA L I  ++   EI   +  A +  HPD  SPS
Sbjct: 6   YAILNITPKASAEEIKYAYKKAALETHPDRVSPS 39


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 479 YHDIALLKTQKQIQFNVNVVPACLYSGE 396
           YH    L  Q+Q++  +N   AC   GE
Sbjct: 422 YHKALTLSPQEQLEMRINARSACARFGE 449


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
 Frame = -1

Query: 221 TQLCYGDRKMTRDTCQGDSGGPLILH----QSEVGCAKAVFGVTSSGVECDEATAGLYTR 54
           T LC+ D  M R   +   G P+I +    Q E     +      +G E +  ++ L + 
Sbjct: 316 TLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSE 375

Query: 53  --VEHYKPW 33
              EHYK +
Sbjct: 376 WLAEHYKDY 384


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 467 ALLKTQKQIQFNVNVVPACLYSGEKKRNID 378
           +LLK   ++Q N   + AC+Y   KK+N++
Sbjct: 458 SLLKMFGEMQENQGFLNACIYYINKKKNLN 487


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 428 NVVPACLYSGEKKRNIDPSRALALGWGY 345
           ++VP C+Y   K+    P   L L +GY
Sbjct: 183 SLVPVCIYPAMKRITYYPQVVLGLTFGY 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,286
Number of Sequences: 5004
Number of extensions: 41488
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)