Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a04
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339...    29   2.8  
08_01_0992 + 10045182-10045917,10046225-10046685                       29   2.8  
03_05_1057 - 30005946-30006088,30006183-30006243,30006493-300065...    29   2.8  
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467...    28   5.0  
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692     28   6.6  
01_06_1740 - 39575614-39576981                                         28   6.6  
03_02_0371 + 7858170-7859624                                           27   8.7  

>12_02_0952 -
           24731799-24731901,24732169-24732231,24732941-24733980,
           24734094-24734339
          Length = 483

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -1

Query: 515 VIP-HPDY-ASPSKYHDIALLKTQKQIQFNVNVVPACLYSGEK--KRNIDPSRALAL 357
           V+P H  Y A    YH I L+  + Q  FN   +PA    G +  K N DP+R++++
Sbjct: 194 VLPLHDSYLACVDCYHGIILIDVKTQRYFNYIPLPAEAMRGRRVDKYNPDPARSVSI 250


>08_01_0992 + 10045182-10045917,10046225-10046685
          Length = 398

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 506 HPDYASPSK----YHDIALLKTQKQIQFNVNVVPACLYSGEKKRNIDPSRALA 360
           HP Y SP       H  A + T  ++    + VPA  +   ++ NI P R LA
Sbjct: 183 HPGYLSPGPDMPPAHAAAAMDTVMEVGLIRHAVPASWWKSMRRLNIGPERRLA 235


>03_05_1057 -
           30005946-30006088,30006183-30006243,30006493-30006566,
           30006939-30007020,30007097-30007355,30007633-30007682,
           30008243-30008275
          Length = 233

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 518 QVIPHPDYASPSKYHDIALLKTQKQIQ 438
           Q I HPD+ S S+ HD   +K Q+ IQ
Sbjct: 8   QHILHPDFQSSSQAHDFVGVKMQRAIQ 34


>03_03_0149 +
           14843880-14844145,14846501-14846561,14846608-14846720,
           14848448-14848540,14849578-14849793,14853773-14856023
          Length = 999

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 290 FTAEECSTRYPSNRHMLDGFDNSTQLCYGDRKMTRDTCQGDSGGPLIL 147
           F   E S+ Y  +   L+  +N+  +    +++     QGD+GGP++L
Sbjct: 403 FDRPEQSSLYYHHHIRLEPLENNVVMKLFHKRLRNQDKQGDAGGPMVL 450


>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
          Length = 455

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 135 LTLMQDQGSAAIALASVARHLAVSVAQLRAVVEPVEHV 248
           LT + D   A   L++ A   A+ V   R VV+P EH+
Sbjct: 325 LTQVLDSDCALSLLSAPANSTAIDVGGGRVVVQPTEHI 362


>01_06_1740 - 39575614-39576981
          Length = 455

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 264 LPFEPTHARRVRQQHAVVLRRPQDDARHLPGR*RR 160
           +P  P H   V  + A + RRP     +LP R RR
Sbjct: 78  VPQSPVHGDAVAGEEAALARRPGKKPSYLPARLRR 112


>03_02_0371 + 7858170-7859624
          Length = 484

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 404 SGEKKRNIDPSRALALGWGYLGPNTQLADVLQKV 303
           SG KKR   P R   LG     P TQL D+L+K+
Sbjct: 366 SGGKKRGPAPFRTYNLGNTSPVPVTQLVDLLEKL 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,412
Number of Sequences: 37544
Number of extensions: 328737
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)