Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a04
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 58 6e-09
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 56 1e-08
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 50 2e-06
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 33 0.12
Z50795-6|CAD59152.2| 707|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z50795-5|CAA90665.2| 705|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 28 4.4
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 28 4.4
Z83744-4|CAB06040.4| 735|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 57.6 bits (133), Expect = 6e-09
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Frame = -1
Query: 506 HPDYASPSKYHDIALLKTQKQIQFNVNVVPACLYSGEKKRNIDPSRALALGWGY-LG--- 339
H Y + + +DIALL+ + + + P CL + K + +G+G LG
Sbjct: 113 HSGYNNQTADNDIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDS 171
Query: 338 ---PNTQLADVLQKVEVSEFTAEECSTRYPSNRHMLDGFDNSTQLCYGDRKMTRDTCQGD 168
P + LQ V + ++C + +L Q+C G T GD
Sbjct: 172 SGEPKLINSQTLQSTSVPIISDDDCVKTWRF-LSLLSVKITGYQICAG--AYLHGTAPGD 228
Query: 167 SGGPLILHQSEVGCAKAVFGVTSSGVE-----CDEAT-AGLYTRVEHYKPWIESIV 18
SGGPL++H+S + G+TS G + D+ G+YTR+ Y PWI+ ++
Sbjct: 229 SGGPLLIHKSNGEYVQ--IGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 56.4 bits (130), Expect = 1e-08
Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 3/156 (1%)
Frame = -1
Query: 476 HDIALLKTQKQ-IQFNVNVVPACLYSGEKKRNIDPSRALAL-GWGYLGPNTQLADVLQKV 303
HDIA+L+ I+FN P CL S K P R + GWG +G + A+ LQ
Sbjct: 116 HDIAILEIPYPGIEFNEYAQPICLPS--KDFVYTPGRQCVVSGWGSMG--LRYAERLQAA 171
Query: 302 EVSEFTAEECSTRYPSNRHMLDGFDNSTQLCYGDRKMTRDTCQGDSGGPLILHQSEVGCA 123
+ +C N + + + C G + D+CQGDSGGP + + A
Sbjct: 172 LIPIINRFDCV-----NSSQIYSSMSRSAFCAGYLEGGIDSCQGDSGGPFACRRED--GA 224
Query: 122 KAVFGVTSSGVEC-DEATAGLYTRVEHYKPWIESIV 18
+ GV S G C + G+YT V Y WI +I+
Sbjct: 225 FVLAGVISWGDGCAQKKQPGIYTMVAPYLSWISAII 260
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 49.6 bits (113), Expect = 2e-06
Identities = 49/173 (28%), Positives = 70/173 (40%), Gaps = 6/173 (3%)
Frame = -1
Query: 530 HTLAQVIPHPDY--ASPSKYHDIALLKTQKQIQFNVNVVPACLYSGEKKRNIDPSRALAL 357
H + V HP Y PS Y D A+++ + + P CL S N +
Sbjct: 125 HRVTAVSIHPWYNIGFPSSY-DFAIMRIHPPVNTSTTARPICLPSLPAVEN---RLCVVT 180
Query: 356 GWGYLGPNTQL-ADVLQKVEVSEFTAEECST--RYPSNRHMLDGFDNSTQLCYGDRKMTR 186
GWG + L A L+++ V + CS+ Y H+ + LC G
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHL------PSMLCAGYSYGKI 234
Query: 185 DTCQGDSGGPLILHQSEVGCAKAVFGVTSSGVECDE-ATAGLYTRVEHYKPWI 30
D+CQGDSGGPL+ + + GV S G+ C G+Y V WI
Sbjct: 235 DSCQGDSGGPLMCARDG---HWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 48.8 bits (111), Expect = 3e-06
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Frame = -1
Query: 515 VIPHPDYASPS--KYHDIALLKTQKQIQFNVNVVPACLYSGEKKRNIDPSRALAL-GWGY 345
V+ ++AS + K HD A+++ +K+I F+ NV P CL + N+ +++LA+ GWG
Sbjct: 128 VLVDGEFASSNCLKGHDWAIVEVEKRIHFSENVRPICL----PRPNMYYTKSLAVPGWGR 183
Query: 344 LGPNTQLADVLQKVEVSEFTAEECSTRYPSNRHMLDGFDNSTQLCYGDRKMTRDTCQGDS 165
+ + + + S R P++ D F +T + + R TC GDS
Sbjct: 184 IFNESGPLIHEIPMRIDRDCKRPWSDRLPADA---DDFICATSMNVSNYSAPR-TCHGDS 239
Query: 164 GGPLILHQSEVGCAKAVFGVTSSGVE-CDEATAGLYTRVEHY 42
GG L G A + +TS G C +TRV+ Y
Sbjct: 240 GGGLEYRDDNYGRA-FLIAITSFGTRGCPSNMLARFTRVDMY 280
>U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical
protein B0286.6 protein.
Length = 279
Score = 40.7 bits (91), Expect = 8e-04
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Frame = -1
Query: 479 YHDIALLKTQKQIQFNVNVVPACLYSGEKKRNIDPSRALALGWGYLGPNTQLADVLQKVE 300
++DIA+ + ++ I+F+ ++ PACL S K I + G+G P+ + + +
Sbjct: 120 FNDIAVFELEEPIEFSKDIFPACLPSAPKIPRIRETGYKLFGYG-RDPSDSVLESGKLKS 178
Query: 299 VSEFTAEECSTRYPSNRHMLDGFDNSTQLCYGDRKMTRD-TCQGDSGGPLILHQSEVGCA 123
+ F A ECS +P Y + R +C GDSG ++ S+
Sbjct: 179 LYSFVA-ECSDDFPYGG------------VYCTSAVNRGLSCDGDSGSG-VVRTSDTRNV 224
Query: 122 KAVFGVTSSGVECDE 78
+ + GV S+G+ C E
Sbjct: 225 QVLVGVLSAGMPCPE 239
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 188 RDTCQGDSGGPLILHQSEVGCAKAVFGVTSSGVECDEATAG 66
++ C GDSGG L HQS+ + + + S G +C + G
Sbjct: 267 KNVCSGDSGGGLTFHQSD-SAREFIIAIVSYGSDCVQLIGG 306
>Z50795-6|CAD59152.2| 707|Caenorhabditis elegans Hypothetical
protein R166.5b protein.
Length = 707
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 599 LGPLKYAALGILKRSDPPEIWQRHTLAQVIPHPDYASP 486
+ P+K L + + P +RH L+QV PD ASP
Sbjct: 339 VSPVKLCDLDLASQRPPQH--ERHPLSQVASEPDLASP 374
>Z50795-5|CAA90665.2| 705|Caenorhabditis elegans Hypothetical
protein R166.5a protein.
Length = 705
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 599 LGPLKYAALGILKRSDPPEIWQRHTLAQVIPHPDYASP 486
+ P+K L + + P +RH L+QV PD ASP
Sbjct: 337 VSPVKLCDLDLASQRPPQH--ERHPLSQVASEPDLASP 372
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +1
Query: 373 LGSMLRFFSPEYKHAGTTLTLNCICFWVLRSAMSWYLE---GE-A*SGCGMTWARVC 531
LG++ RF S YKH G + ++ +Y+E G+ SGC W +VC
Sbjct: 120 LGNIWRFPSVCYKHGGGAFLIPYFIMLMIGGLPMFYMELVLGQFHRSGCVSIWRKVC 176
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +1
Query: 373 LGSMLRFFSPEYKHAGTTLTLNCICFWVLRSAMSWYLE---GE-A*SGCGMTWARVC 531
LG++ RF S YKH G + ++ +Y+E G+ SGC W +VC
Sbjct: 120 LGNIWRFPSVCYKHGGGAFLIPYFIMLMIGGLPMFYMELVLGQFHRSGCVSIWRKVC 176
>Z83744-4|CAB06040.4| 735|Caenorhabditis elegans Hypothetical
protein C06A12.4 protein.
Length = 735
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 281 EECSTRYPSNRHMLDGFDNSTQLCYGDRK 195
+EC R P R ++ N+ +CY D K
Sbjct: 443 KECWNRDPEKRPTIENLRNAIAICYADSK 471
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,728,182
Number of Sequences: 27780
Number of extensions: 251963
Number of successful extensions: 733
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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