Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a04
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    77   1e-16
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.99 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.0  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   9.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 77.0 bits (181), Expect = 1e-16
 Identities = 61/173 (35%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
 Frame = -1

Query: 530 HTLAQVIPHPDYASPSK----YHDIALLKTQKQIQFNVNVVPACLYSGEKKRNIDPSRAL 363
           H++ +VI HP Y    K     +DIALLKT+K I+F   V PACL       +   S   
Sbjct: 234 HSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVT 293

Query: 362 ALGWGYLGPNTQLADVLQKVEVSEFTAEECSTRYPSNRHMLDGFDNSTQLCYGDRKMTRD 183
            LGWG+   N  L+ +LQK  ++  T  EC  +Y  N  +      +    Y   K   D
Sbjct: 294 VLGWGHTSFNGMLSHILQKTTLNMLTQVEC-YKYYGNIMV------NAMCAYAKGK---D 343

Query: 182 TCQGDSGGPLILHQSEVGCAKAVFGVTSSGVECDEATAGLYTRVEHYKPWIES 24
            CQ DSGGP +L Q+         G+ S G EC +   G  T+V  Y  WI S
Sbjct: 344 ACQMDSGGP-VLWQNPRTKRLVNIGIISWGAECGKYPNG-NTKVGSYIDWIVS 394


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 467 ALLKTQKQIQFNVNVVPACLYSGEKKRNIDPSRALAL 357
           A+ + Q+Q+Q NV      L + +KK+   P + LAL
Sbjct: 145 AIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLAL 181


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 590 LKYAALGILKRSDPPEIWQRHTLAQVIPHPDYASPSKYHDIALLKTQKQI 441
           ++++ +GI +      I ++H LA V  HP   +P K     ++K   QI
Sbjct: 432 IRHSQIGISRAMSALRILEKHELANV--HPVGINPGKMQLKNIIKKLLQI 479


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
          protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 77 ATAGLYTRVEHYKPWI 30
          A A LY RVE   PWI
Sbjct: 50 ACAALYERVEWSGPWI 65


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 239 DGFDNSTQLCYGDRKMTRDTCQGDSGGPLIL-HQSEVGCAKAVFGVTSSGVEC 84
           D  D+   +    +K      Q D GGPL L ++ E   +       + G+EC
Sbjct: 420 DNEDHDENMIIPPKKSDMSNMQSDDGGPLSLKNKVETTHSGTSLFRINLGIEC 472


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 146 HQSEVGCAKAVFGVTSSGVECDEATA 69
           HQ +   A A FG TSS V    +TA
Sbjct: 101 HQQQQAVAAAAFGATSSMVPGFGSTA 126


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 249 THARRVRQQHAVVLRR 202
           TH ++VR+Q A +L R
Sbjct: 46  THMKKVREQMAGILSR 61


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 305 VEVSEFTAEECSTRYPSNRHMLDGFDNSTQLCYGDRKMTRD 183
           +E SE  +++ +T   S R+   GF +++     +R  +RD
Sbjct: 189 IEKSENESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRD 229


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 512 IPHPDYASPSKYHDIALLKT 453
           I   D ++  KY D+ +LKT
Sbjct: 593 IEFTDLSNERKYEDVCVLKT 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,825
Number of Sequences: 438
Number of extensions: 2822
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)