Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a02
         (488 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441204-1|AAL35279.1|  141|Homo sapiens eosinophil cationic pro...    31   2.1  
X70697-1|CAA50029.1|  630|Homo sapiens serotonin transporter pro...    29   8.6  
U27699-1|AAA87029.1|  614|Homo sapiens pephBGT-1 betaine-GABA tr...    29   8.6  
L42300-1|AAA66574.1|  614|Homo sapiens betaine/GABA transporter ...    29   8.6  
L05568-1|AAA35492.1|  630|Homo sapiens Na+/Cl- dependent seroton...    29   8.6  
BC126217-1|AAI26218.1|  614|Homo sapiens solute carrier family 6...    29   8.6  
BC126215-1|AAI26216.1|  614|Homo sapiens solute carrier family 6...    29   8.6  
BC069484-1|AAH69484.1|  630|Homo sapiens solute carrier family 6...    29   8.6  
AY902473-1|AAW80933.1|  630|Homo sapiens serotonin transporter p...    29   8.6  

>AF441204-1|AAL35279.1|  141|Homo sapiens eosinophil cationic
           protein precursor polymorphism 1 protein.
          Length = 141

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 165 TINQKHCVVSLKALNRLITFKCNNVFSIKCTTVANV 58
           ++N   C ++++A+N    ++C N  +  CTT ANV
Sbjct: 25  SLNPPRCTIAMRAINNY-RWRCKNQNTFLCTTFANV 59


>X70697-1|CAA50029.1|  630|Homo sapiens serotonin transporter
           protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +3

Query: 240 WQKVCPLFQ---YGVCELKTYLRFYFISKMLFS 329
           W+K+CP+F+   Y +C +  Y+  Y+ + M ++
Sbjct: 151 WRKICPIFKGIGYAICIIAFYIASYYNTIMAWA 183


>U27699-1|AAA87029.1|  614|Homo sapiens pephBGT-1 betaine-GABA
           transporter protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +3

Query: 237 SWQKVCPLFQ-YGVCE--LKTYLRFYFI 311
           +W+K+CPLFQ  G+    +++YL  Y+I
Sbjct: 107 AWRKICPLFQGIGLASVVIESYLNVYYI 134


>L42300-1|AAA66574.1|  614|Homo sapiens betaine/GABA transporter
           protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +3

Query: 237 SWQKVCPLFQ-YGVCE--LKTYLRFYFI 311
           +W+K+CPLFQ  G+    +++YL  Y+I
Sbjct: 107 AWRKICPLFQGIGLASVVIESYLNVYYI 134


>L05568-1|AAA35492.1|  630|Homo sapiens Na+/Cl- dependent serotonin
           transporter protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +3

Query: 240 WQKVCPLFQ---YGVCELKTYLRFYFISKMLFS 329
           W+K+CP+F+   Y +C +  Y+  Y+ + M ++
Sbjct: 151 WRKICPIFKGIGYAICIIAFYIASYYNTIMAWA 183


>BC126217-1|AAI26218.1|  614|Homo sapiens solute carrier family 6
           (neurotransmitter transporter, betaine/GABA), member 12
           protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +3

Query: 237 SWQKVCPLFQ-YGVCE--LKTYLRFYFI 311
           +W+K+CPLFQ  G+    +++YL  Y+I
Sbjct: 107 AWRKICPLFQGIGLASVVIESYLNVYYI 134


>BC126215-1|AAI26216.1|  614|Homo sapiens solute carrier family 6
           (neurotransmitter transporter, betaine/GABA), member 12
           protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +3

Query: 237 SWQKVCPLFQ-YGVCE--LKTYLRFYFI 311
           +W+K+CPLFQ  G+    +++YL  Y+I
Sbjct: 107 AWRKICPLFQGIGLASVVIESYLNVYYI 134


>BC069484-1|AAH69484.1|  630|Homo sapiens solute carrier family 6
           member 4 protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +3

Query: 240 WQKVCPLFQ---YGVCELKTYLRFYFISKMLFS 329
           W+K+CP+F+   Y +C +  Y+  Y+ + M ++
Sbjct: 151 WRKICPIFKGIGYAICIIAFYIASYYNTIMAWA 183


>AY902473-1|AAW80933.1|  630|Homo sapiens serotonin transporter
           protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +3

Query: 240 WQKVCPLFQ---YGVCELKTYLRFYFISKMLFS 329
           W+K+CP+F+   Y +C +  Y+  Y+ + M ++
Sbjct: 151 WRKICPIFKGIGYAICIIAFYIASYYNTIMAWA 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,852,473
Number of Sequences: 237096
Number of extensions: 1304588
Number of successful extensions: 2275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2275
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)