Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a02
         (488 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM0288...    28   6.0  
AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional...    28   6.0  
AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,...    28   6.0  

>AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM02885
           protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +1

Query: 250 CAHCSNMESVN*KRTCDFISFPRCYFLLCSLNTTTGLRKSVCKEITRRPFFLNLFCSCHV 429
           C H S++ SV   ++C  + + +   +L    +T G+  ++  EI  +P+FL  +   H+
Sbjct: 90  CVHLSDVVSV---QSCPDVKYGKRVRILPIDESTEGVTGNLF-EIYLKPYFLEAYRPIHM 145

Query: 430 GDS 438
           GD+
Sbjct: 146 GDN 148


>AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional
           endoplasmic reticulumATPase TER94 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +1

Query: 250 CAHCSNMESVN*KRTCDFISFPRCYFLLCSLNTTTGLRKSVCKEITRRPFFLNLFCSCHV 429
           C H S++ SV   ++C  + + +   +L    +T G+  ++  EI  +P+FL  +   H+
Sbjct: 90  CVHLSDVVSV---QSCPDVKYGKRVRILPIDESTEGVTGNLF-EIYLKPYFLEAYRPIHM 145

Query: 430 GDS 438
           GD+
Sbjct: 146 GDN 148


>AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,
           isoform A protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +1

Query: 250 CAHCSNMESVN*KRTCDFISFPRCYFLLCSLNTTTGLRKSVCKEITRRPFFLNLFCSCHV 429
           C H S++ SV   ++C  + + +   +L    +T G+  ++  EI  +P+FL  +   H+
Sbjct: 90  CVHLSDVVSV---QSCPDVKYGKRVRILPIDESTEGVTGNLF-EIYLKPYFLEAYRPIHM 145

Query: 430 GDS 438
           GD+
Sbjct: 146 GDN 148


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,682,538
Number of Sequences: 53049
Number of extensions: 373234
Number of successful extensions: 1082
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)