Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a02
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin reu...    31   0.34 
AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of...    31   0.34 
AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine re...    30   1.0  
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    28   3.2  
AF125961-2|AAD14739.1|  343|Caenorhabditis elegans Serpentine re...    28   3.2  
Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z74033-6|CAF31474.1|  321|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AC006680-6|AAK72300.1|  335|Caenorhabditis elegans Serpentine re...    27   7.3  
Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    27   9.7  
U97009-5|AAC69036.2|  505|Caenorhabditis elegans Nuclear hormone...    27   9.7  
U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin
           reuptake transporter protein.
          Length = 671

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = +3

Query: 240 WQKVCPLFQ---YGVCELKTYLRFYF 308
           W+KVCPLF+   YG+C + T++  ++
Sbjct: 172 WRKVCPLFRGIGYGICCICTFIAIFY 197


>AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 5 protein.
          Length = 671

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = +3

Query: 240 WQKVCPLFQ---YGVCELKTYLRFYF 308
           W+KVCPLF+   YG+C + T++  ++
Sbjct: 172 WRKVCPLFRGIGYGICCICTFIAIFY 197


>AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein38 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 219 NIIYFLSWQKVCPLFQYGVCELKTYLR 299
           ++ YF++WQ +C    Y   E++ Y+R
Sbjct: 138 SVAYFVAWQTICWFLGYASVEMRQYVR 164


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +3

Query: 207 FFYGNIIYFLSWQKVCPLFQYGVCELKTYLRFYFISKMLFSFML 338
           F    +IYF+ ++++  L+ +G   LKT L  YFIS +L++ ML
Sbjct: 34  FAVPGLIYFM-FKRLFQLYFHG--NLKTLLIAYFISILLYAVML 74


>AF125961-2|AAD14739.1|  343|Caenorhabditis elegans Serpentine
           receptor, class j protein15 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 222 IIYFLSWQKVCPLFQYGVCELKTYLRFYF 308
           I + + W  VC LF YG  E++ Y+R  F
Sbjct: 143 ITHGIVWAGVCELFLYGDNEMRDYIRDAF 171


>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 9   VFIFIFIEHFXLSYINLHLQLSY 77
           +FIF+F+ HF  +Y+     LS+
Sbjct: 499 LFIFVFVNHFRKNYVGFKYPLSF 521


>Z74033-6|CAF31474.1|  321|Caenorhabditis elegans Hypothetical
           protein F38B7.8 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 310 FPRCYFLLCSLNTTTGLRKSV 372
           FPR Y ++C + TT GL  S+
Sbjct: 119 FPRYYNMICGIKTTLGLLTSI 139


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 382  FLYTHFFLDLLSYLMSIKENNILEMK*NRKYVFNSQTP 269
            F+++   +D  +YL     N +L+++ N+K  FN ++P
Sbjct: 5780 FIHSRVPMDSRTYLSVNNNNELLKIRTNKKTWFNGKSP 5817


>AC006680-6|AAK72300.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein13 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 204 IFFYGNIIYFLSWQKVCPLFQYGVCELKTYLRFYF 308
           IFF   +I+ + W  +C LF Y   E++ Y+R  F
Sbjct: 140 IFF---LIHGIVWGGICELFLYADDEMRDYIRDVF 171


>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 228 YFLSWQKVCPLFQYGVCELKTYLRFYFISKMLFSFMLIKYDNRSKK 365
           +F    K   L    VCE+K Y   + I + + SFM     ++ KK
Sbjct: 142 FFNKISKPLKLCNPNVCEIKVYFSTHIIMEPILSFMTCLNPSQLKK 187


>U97009-5|AAC69036.2|  505|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 220 protein.
          Length = 505

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 255 PLFQYGVCELKTYLRFYFISKMLFSFMLI 341
           P F+Y  C++   + F+F+   + SF+ I
Sbjct: 34  PFFEYTPCQIPVQISFFFLLCPVISFLYI 62


>U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical
           protein R12C12.3 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 112 YFQMQQRVQY*MYDSCKCRFMYDXLKCSINIKMNTS 5
           Y+   ++ +   +D  +CR   D +KCS  + +N+S
Sbjct: 290 YYGFSEKFRTIFHDIIRCRQRLDDVKCSTYLPVNSS 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,822,907
Number of Sequences: 27780
Number of extensions: 219367
Number of successful extensions: 518
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)