Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a01
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 1.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.0
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.7
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 27 2.7
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 3.6
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 4.7
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 8.3
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.3
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 8.3
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 8.3
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 8.3
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 95 FGKSNANDIYPVVLTSISSFTEWILQN 15
FG S AN + PV L S SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 204 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 383
S+D I L+ F H+E + +Y L E+ +N GYYD D S
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627
Query: 384 L 386
L
Sbjct: 628 L 628
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 113 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 220
+H+ + H S+Y R+R PG N QS H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 562 STILHTVALSLDLPVAVSPVKYLMFTLLL 476
++IL T+ SL + VSP Y +FT LL
Sbjct: 104 TSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 486 VNIRYFTGLTATGRSSDNATVCRIVEFSME 575
+N+ Y + L+ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -3
Query: 161 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 15
D + +L + + +SF K D YP + + FT+ ++QN
Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 119 NALVGI-VSFGKSNANDIYPVVLTSISSFTEWILQ 18
NAL + V FGK+ +ND+ L + + T+W+L+
Sbjct: 614 NALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLR 648
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 410 WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 505
W +LLV + C NS +R+G Q +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 286 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 393
PSD T VP + S PW TTP P W+
Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 8.3
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +3
Query: 297 TAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM-CYSYDAHIL-VVILLREFG 470
T + G P K GYY+T+ S +D G+ + + I + +L R +
Sbjct: 1118 TFGIGGKDPETGEVKPGFGYYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYP 1177
Query: 471 MVNSKVNIRYFTGLTATGRSSDNATVCRIVEF 566
++ K IR +G G+ V R +EF
Sbjct: 1178 VILRKFIIRENSG--GAGKYKGGDGVIRDIEF 1207
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 50 W*VLRGRCHWHCS 88
W V+ GRC W CS
Sbjct: 406 WEVMTGRCVWKCS 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,622
Number of Sequences: 5004
Number of extensions: 57980
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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