Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a01
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    29   2.1  
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415...    29   2.8  
01_06_0125 + 26711157-26713297,26715026-26715206                       28   4.8  
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927     28   6.4  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    28   6.4  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     28   6.4  
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179           27   8.5  
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354...    27   8.5  

>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 125 RRQGHPSQYCRSRGHQPGPNRR 190
           RR+ H  ++ R RG QP PNRR
Sbjct: 27  RRRRHHQRHRRRRGGQPAPNRR 48


>06_01_0580 +
           4148969-4149101,4149394-4149546,4149682-4150095,
           4150218-4150294,4151479-4152699,4153057-4153128
          Length = 689

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 247 SLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIPWGITTP 366
           SL  T+SS+L R+PS +LPP  ++        +P  I  P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433


>01_06_0125 + 26711157-26713297,26715026-26715206
          Length = 773

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 42  TDAGEYYGVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAE 194
           ++ GE  GVD I ++ S   D   + +E GRG    + ++     D  G E
Sbjct: 109 SEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEGDE 159


>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
          Length = 229

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 333 SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQG 235
           SAR    R     I  +PP  R HC+++R+++G
Sbjct: 86  SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 276 VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 416
           V++A ++   L  +   E I  N L  +D +LDN+TL+  ++ +  M
Sbjct: 299 VDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 450 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 340
           L  GC+    N C   R K+P  C  P  C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325


>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
          Length = 312

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 280 RLPSDTLPP*TVVPH-PSRSTKIPWGITTPCWIIAPCWMF 396
           +LPS +LPP    PH P  ST +    T+PC    P   F
Sbjct: 6   KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCF 45


>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
            25335559-25335624,25335717-25336685,25336791-25336912,
            25337156-25337549,25337888-25338009,25338253-25338646,
            25338983-25339104,25339348-25339830,25340291-25340960,
            25341713-25342224,25342484-25342540
          Length = 1581

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 63   GVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLV--LF 236
            G D+    L +  D Y  +L  G GT+ +IV      PD+    ++ + D++ TL+  +F
Sbjct: 1378 GKDISDYGLPELTDTY-YLLRIGNGTKNTIVDDYVRLPDEIVIGYLDNEDSVNTLIEYVF 1436

Query: 237  PAV 245
            P++
Sbjct: 1437 PSL 1439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,310
Number of Sequences: 37544
Number of extensions: 425156
Number of successful extensions: 1174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)