Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a01
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    39   0.002
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.35 
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    31   0.46 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.61 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   0.81 
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   1.9  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   1.9  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
 Frame = -3

Query: 326 GWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNT 147
           GWG+T++G S+S   L ++ + + +   C        R+   +  CAG    G  D    
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQG 239

Query: 146 DLGAPAFFQN----ALVGIVSFGKSNANDIYPVVLTSISSFTEWI 24
           D G P          L G+VS+G   A    P V  ++ S + WI
Sbjct: 240 DSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 438 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 337
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 8/197 (4%)
 Frame = -3

Query: 590 STATCFHGEFYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPEFSEENYDKDVSIVRVT 417
           + A CF  +    +Y  ++         G  +I Y+     +P + ++ +  D++I+ + 
Sbjct: 66  TAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIP 124

Query: 416 H-AIHFGPNXXXXXXXXXXXXXXXXXXVDLLGWGTTVQGGSVSDGNLHKLELIVTNKENC 240
           +  I F                       + GWG+    G      L    + + N+ +C
Sbjct: 125 YPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSM---GLRYAERLQAALIPIINRFDC 181

Query: 239 REQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN-----ALVGIVSFGKSNAN 75
               + +  + + + FCAG +  GG D    D G P   +       L G++S+G   A 
Sbjct: 182 VNSSQIYSSM-SRSAFCAGYLE-GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQ 239

Query: 74  DIYPVVLTSISSFTEWI 24
              P + T ++ +  WI
Sbjct: 240 KKQPGIYTMVAPYLSWI 256


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -2

Query: 414 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 283
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 438  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 343
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 131 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 235
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 131 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 235
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,934
Number of Sequences: 27780
Number of extensions: 346843
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)