Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10p14
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505...    30   1.6  
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    29   3.7  
06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117           28   6.4  

>03_02_0021 -
           5049705-5049713,5049744-5049770,5049877-5049940,
           5050019-5050806,5050888-5051046,5051778-5052419
          Length = 562

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 249 RPFPSQIVMCSDANVSSSHTMPMRLDLMSRGR 154
           +P P Q+   + +  SS H+MP  LDL+SRG+
Sbjct: 487 QPAPWQLKQGAPSAGSSYHSMPYGLDLLSRGK 518


>10_08_0106 +
           14842748-14843085,14843122-14843250,14844145-14844211,
           14847177-14847324,14847998-14848097,14848306-14848384,
           14848527-14848687,14848829-14848908,14849319-14849475,
           14849575-14849723,14849909-14850076,14850426-14850719,
           14851002-14851046,14851213-14851462,14851707-14851835,
           14852799-14853039,14853977-14854642
          Length = 1066

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 148 PPPASRHEVQSHWHCMTAA 204
           PPPASRHE   H H    A
Sbjct: 897 PPPASRHEAAEHAHAKNTA 915


>06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117
          Length = 457

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
 Frame = -1

Query: 93  SLPTKCLYCYKLFV--QLWNVS-TYVIIC 16
           S+P +CL+ YK+++  + W+VS  Y++ C
Sbjct: 265 SIPKQCLHRYKIYIEGEAWSVSEKYIMAC 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,032
Number of Sequences: 37544
Number of extensions: 260539
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)