Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10p14
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical
            protein R05D3.11 protein.
          Length = 1327

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 331  SCEVVKMSLQLNS*IALSPIKMLFCSPPSISVTNCHVFRC*CQQQSYNANETGPH 167
            S E  K   Q N  + +S +   FCS  S         +C CQQ S  A +  PH
Sbjct: 936  SLEYSKRRFQYNDQVDISSVSRDFCSGCSCDGDCSDASKCECQQLSIEAMKRLPH 990


>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
          protein C35A5.5 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 63 KLFVQLWNVSTYVIICIFCFY 1
          K+ ++ WNV  Y ++ + CFY
Sbjct: 17 KILLKKWNVVIYFVLILICFY 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,928
Number of Sequences: 27780
Number of extensions: 260119
Number of successful extensions: 479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)