Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10p10
(242 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 0.41
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 0.41
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 0.41
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 0.41
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 21 2.2
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 2.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 20 3.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 20 3.8
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 19 6.7
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 19 6.7
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 19 8.8
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.4 bits (48), Expect = 0.41
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 138 SPSQIRTRISVMPILLQQAWLNPQVRFEH 52
SP + + V LLQQ W +P++R+ +
Sbjct: 99 SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.4 bits (48), Expect = 0.41
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 138 SPSQIRTRISVMPILLQQAWLNPQVRFEH 52
SP + + V LLQQ W +P++R+ +
Sbjct: 99 SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.4 bits (48), Expect = 0.41
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 138 SPSQIRTRISVMPILLQQAWLNPQVRFEH 52
SP + + V LLQQ W +P++R+ +
Sbjct: 150 SPDESSLKYEV-EFLLQQQWYDPRLRYSN 177
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.4 bits (48), Expect = 0.41
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 138 SPSQIRTRISVMPILLQQAWLNPQVRFEH 52
SP + + V LLQQ W +P++R+ +
Sbjct: 99 SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.0 bits (42), Expect = 2.2
Identities = 5/15 (33%), Positives = 11/15 (73%)
Frame = -3
Query: 234 FKFAILKVYLICCSL 190
F + ++++Y+ CC L
Sbjct: 241 FSYYLIQIYIPCCML 255
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.0 bits (42), Expect = 2.2
Identities = 5/15 (33%), Positives = 11/15 (73%)
Frame = -3
Query: 234 FKFAILKVYLICCSL 190
F + ++++Y+ CC L
Sbjct: 241 FSYYLIQIYIPCCML 255
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.2 bits (40), Expect = 3.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 153 KYLVFSPSQIRTRISVMPILLQQAWLNPQ 67
KYL+F+ + I V ++L + +PQ
Sbjct: 309 KYLIFAMILVSISICVTVVVLNVHFRSPQ 337
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.2 bits (40), Expect = 3.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 153 KYLVFSPSQIRTRISVMPILLQQAWLNPQ 67
KYL+F+ + I V ++L + +PQ
Sbjct: 309 KYLIFAMILVSISICVTVVVLNVHFRSPQ 337
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 19.4 bits (38), Expect = 6.7
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -3
Query: 96 LLQQAWLNPQ 67
LLQ WL+P+
Sbjct: 339 LLQNTWLDPE 348
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 19.4 bits (38), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 171 KLNCFSLTSNKLDTPSRW 224
K++ FSL NKL T R+
Sbjct: 151 KIHVFSLHDNKLITMYRF 168
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 19.0 bits (37), Expect = 8.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 123 RTRISVMPILLQQAWLNPQVRFEHMQTVL 37
R +++ +L Q L+P +RF + T L
Sbjct: 254 RPKMTPQSLLPSQTGLSPYLRFGCLSTRL 282
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,522
Number of Sequences: 438
Number of extensions: 1372
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4149981
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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