Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10p09
(463 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for ... 250 2e-66
BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein. 250 2e-66
BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11 p... 250 2e-66
BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11 p... 250 2e-66
BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11 p... 250 2e-66
BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein. 250 2e-66
BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11 p... 250 2e-66
BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11 p... 250 2e-66
AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11 p... 250 2e-66
AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11 p... 149 5e-36
BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sortin... 29 5.9
BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sortin... 29 5.9
BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sortin... 29 5.9
>X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for
ribosomal protein S11. ).
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein.
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein.
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 250 bits (612), Expect = 2e-66
Identities = 119/152 (78%), Positives = 135/152 (88%), Gaps = 6/152 (3%)
Frame = -3
Query: 440 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
MAD QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 278 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 99
PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 98 EIGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
+IGDIVT+GECRPLSKTVRFNVLKV+K G+K
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
>AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11
protein.
Length = 83
Score = 149 bits (361), Expect = 5e-36
Identities = 67/77 (87%), Positives = 73/77 (94%)
Frame = -3
Query: 233 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 54
VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1 VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60
Query: 53 KTVRFNVLKVSKGKGSK 3
KTVRFNVLKV+K G+K
Sbjct: 61 KTVRFNVLKVTKAAGTK 77
>BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 458 FSLSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRH 351
+ L+ + D+ E+ + KQ V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305
>BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 458 FSLSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRH 351
+ L+ + D+ E+ + KQ V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305
>BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 458 FSLSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRH 351
+ L+ + D+ E+ + KQ V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,069,566
Number of Sequences: 237096
Number of extensions: 1385332
Number of successful extensions: 2642
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2633
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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