Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10p05
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    32   0.005
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = -3

Query: 581 AKLLVACVMLLSFALIFYVPVDIAWRRIQDRIPAKTHRWAMSGLRLFGTLFIVGLACAVP 402
           A+LLVA V +LSF + F  P  + W+  +   PA    +A +G     T+F+    C  P
Sbjct: 182 ARLLVATVWILSFVICF--PPLVGWKDKRSH-PAYNMTFAQNGPFNTTTIFVPVKPC--P 236

Query: 401 KLELFMELVGAVCLSVLG-LLLPSVIEIIWRW 309
            +       G V  S LG   +P ++ + + W
Sbjct: 237 WICELTNDAGYVVYSALGSFYIPMLVMLFFYW 268


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 554 LLSFALIFYVPVDIAWRRIQDRIPAKTHRWAMSGLRLFGTLFIVGLACA 408
           LLS  L+ ++ + + +  +   I      +   GLR  G LF+  LA A
Sbjct: 22  LLSVLLVGFLFLILIFLSVAGNILVCVAIYTDRGLRRIGNLFLASLAIA 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,486
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)