Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10p03
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   8.3  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.3  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    25   8.3  

>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 352 QKLFTWLWHGGRIIPIKGVRIAQTKSFSYGSVTEALIALFIILNCYGHLRNIG 194
           +KL T+ WH G +IP   ++I+  K  +      +       L+ +G  R  G
Sbjct: 40  EKLPTFSWHEGMLIPGSNMQISFVKDLATPRDPTSYFTFLNYLHSHGQERLSG 92


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 464 LLYFSLMYIVMSYVIYICTYIA-YN 393
           LLY S++++ ++YV+ I  Y+  YN
Sbjct: 33  LLYISIIFLFLNYVVDIVCYVKNYN 57


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 375 VDDVYIRNRNYLHGYGTVAVSYLSKVS 295
           ++D+Y+R +    GYG+  +SYL++ S
Sbjct: 87  LEDLYVRPQFRGKGYGSYLLSYLARES 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,699
Number of Sequences: 5004
Number of extensions: 55578
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)