Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10p03
         (725 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC150280-1|AAI50281.1| 1925|Homo sapiens plexin D1 protein.            32   2.4  
AY116661-1|AAM49063.1| 1925|Homo sapiens plexin D1 protein.            32   2.4  
AB014520-1|BAA31595.1| 1985|Homo sapiens KIAA0620 protein protein.     32   2.4  

>BC150280-1|AAI50281.1| 1925|Homo sapiens plexin D1 protein.
          Length = 1925

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 149  ITDELLWCKVNESVNSNVPQMPITVK 226
            ++D ++ C VNES+ + V Q+PIT++
Sbjct: 1227 VSDRIIHCSVNESLGAAVGQLPITIQ 1252


>AY116661-1|AAM49063.1| 1925|Homo sapiens plexin D1 protein.
          Length = 1925

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 149  ITDELLWCKVNESVNSNVPQMPITVK 226
            ++D ++ C VNES+ + V Q+PIT++
Sbjct: 1227 VSDRIIHCSVNESLGAAVGQLPITIQ 1252


>AB014520-1|BAA31595.1| 1985|Homo sapiens KIAA0620 protein protein.
          Length = 1985

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 149  ITDELLWCKVNESVNSNVPQMPITVK 226
            ++D ++ C VNES+ + V Q+PIT++
Sbjct: 1287 VSDRIIHCSVNESLGAAVGQLPITIQ 1312


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,478,183
Number of Sequences: 237096
Number of extensions: 1800213
Number of successful extensions: 2297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2297
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)