Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10o20
(622 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 30 0.016
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 24 1.4
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 23 2.4
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 23 2.4
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 23 3.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 3.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 5.5
DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein ... 21 7.3
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 21 7.3
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 30.3 bits (65), Expect = 0.016
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Frame = -2
Query: 588 HYSPAIRKFCLTLNSYSSKAYE--YVREVLNSSLP-HPKTLPKWNDIIISETGTTPCANK 418
HY + K L ++ SK +++ +SS+ P+ P +I IS+ + ++K
Sbjct: 254 HYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPIEPEIEISQNSVSTGSDK 313
Query: 417 EKQK--EP-DDFSSEDDYTTEIPEHYLPEHQYTTIKQTSYSTVQHNLYPTIQENYPN 256
E K EP D+ ++ D+ + P + QY+ S PT+ P+
Sbjct: 314 ENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLISNENRDFQTTPTVSVEQPH 370
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.8 bits (49), Expect = 1.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 270 ENYPNDQQVQYTTEQQHY 217
E + N ++ YTT QQ+Y
Sbjct: 194 EKWVNSSEIFYTTSQQYY 211
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 330 CTDVPEDSAQVSLWYNHLLKRNHLVL 407
CT+ PED A + +Y+ H+V+
Sbjct: 122 CTERPEDGALILHYYSDRPGLEHIVI 147
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 330 CTDVPEDSAQVSLWYNHLLKRNHLVL 407
CT+ PED A + +Y+ H+V+
Sbjct: 122 CTERPEDGALILHYYSDRPGLEHIVI 147
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.6 bits (46), Expect = 3.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 480 TLPKWNDIIISETGTTPCANKEK 412
TLPKW D I T P +K K
Sbjct: 202 TLPKWKDGIPVTLTTVPKHSKTK 224
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 3.2
Identities = 12/51 (23%), Positives = 18/51 (35%)
Frame = -2
Query: 348 LPEHQYTTIKQTSYSTVQHNLYPTIQENYPNDQQVQYTTEQQHYSSKPHEE 196
LPE + T + Q N Q+ QQ Q +QQ + +
Sbjct: 1185 LPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQ 1235
Score = 21.4 bits (43), Expect = 7.3
Identities = 11/41 (26%), Positives = 16/41 (39%)
Frame = -2
Query: 345 PEHQYTTIKQTSYSTVQHNLYPTIQENYPNDQQVQYTTEQQ 223
P HQ Q+++ Q P Q+ Q Q +QQ
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQ 849
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -2
Query: 375 YTTEIPEHYLPEHQYTTIKQTSYSTVQHNLYPTIQENYP 259
Y+T P H+ H ++ I T + H P Q + P
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTP 447
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 5.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 245 SSILLSNNTILQSLMKNILQNGMIIPQHNQFHSFS*DLLLLGIYIFV 105
SSILLS L + I + IP ++ F+ L+ L I+I V
Sbjct: 285 SSILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWITV 331
>DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein 5
protein.
Length = 104
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -2
Query: 300 VQHNLYPTIQENYPNDQQV 244
+ + L P +Q+NYP + Q+
Sbjct: 75 IANTLIPFMQQNYPYEWQL 93
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 21.4 bits (43), Expect = 7.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 339 HQYTTIKQTSYSTVQHNLYPTIQENYPNDQ 250
HQ ++Q SY T PT+ + P Q
Sbjct: 713 HQPGAMEQVSYLTSLERTQPTMSQMPPTAQ 742
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,114
Number of Sequences: 438
Number of extensions: 3559
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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