Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10o19
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 46  NYKELYCRNTR 78
           NYK+LYC N R
Sbjct: 95  NYKKLYCNNYR 105


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 492 SFANLQESHLLFKIRKKKNTF 554
           S  N+Q  H   KI++K N F
Sbjct: 258 SLTNIQLEHFEMKIKRKHNVF 278


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = -1

Query: 453 KVKVPLTVIGG---IPG---KYFVFEYLFFCGPPAFVVNLISPQRYVAW 325
           +VK PL  I G   I G   +Y  +E + +  PP       +PQ+  AW
Sbjct: 24  RVKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFRFKAPQKIPAW 72


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = -1

Query: 453 KVKVPLTVIGG---IPG---KYFVFEYLFFCGPPAFVVNLISPQRYVAW 325
           +VK PL  I G   I G   +Y  +E + +  PP       +PQ+  AW
Sbjct: 24  RVKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFRFKAPQKIPAW 72


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 46  NYKELYCRN 72
           NYK+LYC N
Sbjct: 95  NYKKLYCNN 103


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 46  NYKELYCRN 72
           NYK+LYC N
Sbjct: 95  NYKKLYCNN 103


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 406 ILSGNSPNNSQRYL 447
           ++ GNSP +S RYL
Sbjct: 817 LMVGNSPASSPRYL 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,188
Number of Sequences: 438
Number of extensions: 3956
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)