Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10o15
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.19 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 409 APMSSHPHKSRLSKLP--PNAPQLFALEKTMPSVNKP 513
           APM   P+ S +S +P  PN P       TMPS+  P
Sbjct: 415 APMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 54  RSSGLHGNGPASHLGLVQHALGQRAEYVRV 143
           R++GL   GP  +   V HA+ + A  +RV
Sbjct: 424 RNAGLRYRGPKQNKPKVLHAIRRGASILRV 453


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +1

Query: 454 PPNAPQLFALEKTMPSVNKPSKVPADTPVTPEATCCKRSKSFAN 585
           PP   Q FA E   P  +   K  A    TPE T     K  +N
Sbjct: 393 PPQIRQAFAEETLQPGPSMFLKCVASGNPTPEITWELDGKRLSN 436


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 612 WVLLRMRGLVCEGLRPLAAR 553
           W+LL   G+ C+G+  + +R
Sbjct: 4   WLLLMYLGITCQGVTDIHSR 23


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 430  HKSRLSKLPPNAPQLFALEKTMPSV 504
            H +   ++PP+AP L+    T  S+
Sbjct: 1396 HYTLTVQVPPSAPVLYVTSSTSSSI 1420


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 430  HKSRLSKLPPNAPQLFALEKTMPSV 504
            H +   ++PP+AP L+    T  S+
Sbjct: 1392 HYTLTVQVPPSAPVLYVTSSTSSSI 1416


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 276 NRQQTSSVTLQDIIHVLSVRWSNNGVAYRRTPKLYDRK 163
           +R  TS + + + +   +++ S        +P+LYDR+
Sbjct: 250 SRSSTSRIVISESLKHFTIQSSVTTSKMMVSPRLYDRQ 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,455
Number of Sequences: 438
Number of extensions: 5019
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)