Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10o14
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          49   5e-08
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      44   2e-06
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 29/98 (29%), Positives = 50/98 (51%)
 Frame = -2

Query: 646 FEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTA 467
           F  LL+     D TL   +    + HK +L+A S  F+ +      +    ++   DV  
Sbjct: 26  FHQLLQTEAFVDVTLACNEAS-LKAHKVVLSACSSYFQKLLLSNPCK-HPTIIMPQDVCF 83

Query: 466 EDLKYLIEYLYTGYLKNIENADFVNLLMIADRYNLKGL 353
            DLK++IE++Y G + ++  A+  +LL  AD+  +KGL
Sbjct: 84  NDLKFIIEFVYRGEI-DVSQAELQSLLKTADQLKIKGL 120


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 27/98 (27%), Positives = 48/98 (48%)
 Frame = -2

Query: 646 FEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTA 467
           FE L  + +  D TL   DG   + H+ +L+A S  F+ + +  +   +  ++ L DV  
Sbjct: 22  FENLRDDEDFVDVTLAC-DGRSLKAHRVVLSACSPYFRELLK--STPCKHPVIVLQDVAF 78

Query: 466 EDLKYLIEYLYTGYLKNIENADFVNLLMIADRYNLKGL 353
            DL  L+E++Y G + N+      + L  A+   + GL
Sbjct: 79  SDLHALVEFIYHGEV-NVHQRSLSSFLKTAEVLRVSGL 115


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 439 LYTGYLKNIENADFVNLL 386
           ++ GY  N E+ DF++ +
Sbjct: 122 IFNGYFLNSESKDFIDFI 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,256
Number of Sequences: 438
Number of extensions: 3399
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)