Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10o09
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.19 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.19 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.77 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 496 ILWIFFEPILFAFTGAQVTISTLDPVVIKMGAVCLVSCLLIRAVATFLVSFGCGLNYKEK 317
           I+W+ F PI F    A  T  T   V I + A   + CL    +  +++ F    N + K
Sbjct: 717 IIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKI--YIILFQPDKNIRRK 774

Query: 316 L 314
           +
Sbjct: 775 V 775


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 496 ILWIFFEPILFAFTGAQVTISTLDPVVIKMGAVCLVSCLLIRAVATFLVSFGCGLNYKEK 317
           I+W+ F PI F    A  T  T   V I + A   + CL    +  +++ F    N + K
Sbjct: 807 IIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKI--YIILFQPDKNIRRK 864

Query: 316 L 314
           +
Sbjct: 865 V 865


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 496 ILWIFFEPILFAFTGAQVTIS-TLDPVVIKMGAVCLVSCL 380
           ++W+ F P+ F  TG  V +  T   V I + A   ++CL
Sbjct: 859 VIWLAFVPLYFG-TGNNVALRITSMSVTISLSASVTIACL 897


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 751 IAGVALGSLWGALISFIPESGDTH 680
           +AG+A+  L   LISF+P S   H
Sbjct: 143 VAGIAVVWLLAGLISFVPISLGLH 166


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 115 PKLLTRDNGDNKVQSEVESMKPVAHNSS 32
           PKLLT D   +K+  +VE    +A N++
Sbjct: 158 PKLLTFDLKTSKLVKQVEIPHNIAVNAT 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,393
Number of Sequences: 438
Number of extensions: 4144
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)