Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10o08
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    27   1.6  
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    27   2.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   6.5  

>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 283 QGYYQISQRALICVACLYS*SNSEVF 206
           QG+Y + Q++LI ++ +Y   NS+VF
Sbjct: 495 QGWYPVVQKSLIILSKIYRLVNSQVF 520


>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 208 TLHCLITNTNTRRKSKRAERFGSNPGEPRWRHWRP 312
           TL   +  T  RRK++++      P +P WR + P
Sbjct: 11  TLFLYLLITRWRRKNEKSFIASEEPKQPEWRDYTP 45


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 260 LRDL-VVTLVSRAGVTGDRISSPTITFYLTTI 352
           LR L +VT + +A VT D  S+P    +LTT+
Sbjct: 892 LRQLDIVTCLKKALVTLDEFSAPLYATWLTTL 923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,283
Number of Sequences: 5004
Number of extensions: 43463
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)