Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10o07
(378 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80746-1|AAB91444.1| 358|Homo sapiens CAGH4 protein. 33 0.31
BC104758-1|AAI04759.1| 465|Homo sapiens trinucleotide repeat co... 33 0.31
BC068008-1|AAH68008.1| 407|Homo sapiens TNRC4 protein protein. 33 0.31
AL589765-5|CAI17168.1| 465|Homo sapiens trinucleotide repeat co... 33 0.31
AL589765-3|CAI17166.1| 465|Homo sapiens trinucleotide repeat co... 33 0.31
AB209264-1|BAD92501.1| 441|Homo sapiens trinucleotide repeat co... 33 0.31
CR457114-1|CAG33395.1| 364|Homo sapiens HAVCR1 protein. 33 0.41
BC013325-1|AAH13325.1| 364|Homo sapiens HAVCR1 protein protein. 33 0.41
AY165003-1|AAN73884.1| 465|Homo sapiens CUG-BP and ETR-3 like f... 31 0.94
AF329264-1|AAK07474.1| 462|Homo sapiens CUG-BP and ETR-3 like f... 31 0.94
AF043724-1|AAC39862.1| 359|Homo sapiens hepatitis A virus cellu... 31 0.94
U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating... 31 1.2
AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein. 31 1.2
AK131434-1|BAD18580.1| 933|Homo sapiens protein ( Homo sapiens ... 31 1.2
AF007192-1|AAC02270.1| 338|Homo sapiens intestinal mucin protein. 31 1.2
BC052491-1|AAH52491.1| 464|Homo sapiens trinucleotide repeat co... 30 2.9
AK074499-1|BAC11024.1| 636|Homo sapiens protein ( Homo sapiens ... 29 3.8
BC068505-1|AAH68505.1| 644|Homo sapiens zinc finger protein 746... 29 5.0
AK128244-1|BAC87351.1| 459|Homo sapiens protein ( Homo sapiens ... 29 5.0
AK055975-1|BAB71061.1| 242|Homo sapiens protein ( Homo sapiens ... 29 5.0
AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein. 29 5.0
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 29 6.6
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 28 8.8
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 28 8.8
X17360-1|CAA35237.1| 255|Homo sapiens hox 5.1 protein protein. 28 8.8
X04706-1|CAA28411.1| 255|Homo sapiens protein ( Human homeobox ... 28 8.8
BC074797-1|AAH74797.1| 255|Homo sapiens homeobox D4 protein. 28 8.8
BC016763-1|AAH16763.1| 255|Homo sapiens homeobox D4 protein. 28 8.8
>U80746-1|AAB91444.1| 358|Homo sapiens CAGH4 protein.
Length = 358
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 157 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 215
>BC104758-1|AAI04759.1| 465|Homo sapiens trinucleotide repeat
containing 4 protein.
Length = 465
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 322
>BC068008-1|AAH68008.1| 407|Homo sapiens TNRC4 protein protein.
Length = 407
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 206 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 264
>AL589765-5|CAI17168.1| 465|Homo sapiens trinucleotide repeat
containing 4 protein.
Length = 465
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 322
>AL589765-3|CAI17166.1| 465|Homo sapiens trinucleotide repeat
containing 4 protein.
Length = 465
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 322
>AB209264-1|BAD92501.1| 441|Homo sapiens trinucleotide repeat
containing 4 variant protein.
Length = 441
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 240 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 298
>CR457114-1|CAG33395.1| 364|Homo sapiens HAVCR1 protein.
Length = 364
Score = 32.7 bits (71), Expect = 0.41
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = -1
Query: 282 TLKTQLR*WKTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSS 103
T++T T T T TT T++ +P TT++ T T +STT + T T+S
Sbjct: 143 TVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLTTMT-VSTTTSVPTTTSIPTTTS 201
Query: 102 LPLSLVLA 79
+P++ ++
Sbjct: 202 VPVTTTVS 209
>BC013325-1|AAH13325.1| 364|Homo sapiens HAVCR1 protein protein.
Length = 364
Score = 32.7 bits (71), Expect = 0.41
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = -1
Query: 282 TLKTQLR*WKTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSS 103
T++T T T T TT T++ +P TT++ T T +STT + T T+S
Sbjct: 143 TVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTTTTVLTTMT-VSTTTSVPTTTSIPTTTS 201
Query: 102 LPLSLVLA 79
+P++ ++
Sbjct: 202 VPVTTTVS 209
>AY165003-1|AAN73884.1| 465|Homo sapiens CUG-BP and ETR-3 like
factor 3 protein.
Length = 465
Score = 31.5 bits (68), Expect = 0.94
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY P+ +P P PNG P + VDP ++ Y
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPVAPVDPLQQAY 322
>AF329264-1|AAK07474.1| 462|Homo sapiens CUG-BP and ETR-3 like
factor 3 protein.
Length = 462
Score = 31.5 bits (68), Expect = 0.94
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY P+ +P P PNG P + VDP ++ Y
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPVAPVDPLQQAY 322
>AF043724-1|AAC39862.1| 359|Homo sapiens hepatitis A virus cellular
receptor 1 protein.
Length = 359
Score = 31.5 bits (68), Expect = 0.94
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 237 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLSL 88
T +TT RTS +P TT+ T + ++ T T+P +T S S+
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVSTTTSV 185
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -1
Query: 252 TLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLSLVLA 79
T T T TT T++ +P TT+ T T +STT + T T+S+P++ ++
Sbjct: 148 TTVPTTTTVPTTTVPTTMSIPTTTTVPTTMT-VSTTTSVPTTTSIPTTTSVPVTTTVS 204
>U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating
factor protein.
Length = 1404
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 252 TLTQETATNLLTTARTSLILPKITTLMETAT 160
T TQ+T +TT +T+ + PK+TT +T T
Sbjct: 963 TTTQDTTPFKITTLKTTTLAPKVTTTKKTIT 993
>AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.
Length = 1404
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 252 TLTQETATNLLTTARTSLILPKITTLMETAT 160
T TQ+T +TT +T+ + PK+TT +T T
Sbjct: 963 TTTQDTTPFKITTLKTTTLAPKVTTTKKTIT 993
>AK131434-1|BAD18580.1| 933|Homo sapiens protein ( Homo sapiens
cDNA FLJ16561 fis, clone SYNOV4003981, moderately
similar to Homo sapiens proteoglycan 4, (megakaryocyte
stimulating ).
Length = 933
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 252 TLTQETATNLLTTARTSLILPKITTLMETAT 160
T TQ+T +TT +T+ + PK+TT +T T
Sbjct: 492 TTTQDTTPFKITTLKTTTLAPKVTTTKKTIT 522
>AF007192-1|AAC02270.1| 338|Homo sapiens intestinal mucin protein.
Length = 338
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -1
Query: 282 TLKTQLR*WKTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSS 103
T T + W T T T ++L T +S +P TN++ + TLP +T S
Sbjct: 171 TSMTTMTSWPTATN-TLSSLTTNILSSTPVPSTERTTSHTTNINPVSTLVTTLPTTITRS 229
Query: 102 LPLS 91
P S
Sbjct: 230 TPTS 233
>BC052491-1|AAH52491.1| 464|Homo sapiens trinucleotide repeat
containing 4 protein.
Length = 464
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -3
Query: 286 ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 110
A A PV + A NGY + +P P PNG P + A VDP ++ Y
Sbjct: 264 AIAATPVSAIPAALGVNGYSQVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 322
>AK074499-1|BAC11024.1| 636|Homo sapiens protein ( Homo sapiens
cDNA FLJ90018 fis, clone HEMBA1000732, highly similar to
Homo sapiens mRNA for latent transforming growth
factor-beta ).
Length = 636
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = -3
Query: 295 LAMANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPN-GNGYEPIDNGAYYVDPPR 119
L A D + + N Y P RP P +Y P+ G Y+ + G PP
Sbjct: 401 LCPAQDSDDFEALRNVLRPPAYSP--PRPGGFGLPYEYGPDLGPPYQGLPYGPELYPPPA 458
Query: 118 RPY--FKPTPFPGAR 80
PY + P P P AR
Sbjct: 459 LPYDPYPPPPGPFAR 473
>BC068505-1|AAH68505.1| 644|Homo sapiens zinc finger protein 746
protein.
Length = 644
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 178 PNGNGYEPIDNGAYYVDPPR--RPYFKPTPFPGARGG 74
P G Y DNG +DP + RP+ +P +PG G
Sbjct: 397 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 433
>AK128244-1|BAC87351.1| 459|Homo sapiens protein ( Homo sapiens
cDNA FLJ46378 fis, clone TESTI4052775. ).
Length = 459
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 178 PNGNGYEPIDNGAYYVDPPR--RPYFKPTPFPGARGG 74
P G Y DNG +DP + RP+ +P +PG G
Sbjct: 212 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 248
>AK055975-1|BAB71061.1| 242|Homo sapiens protein ( Homo sapiens
cDNA FLJ31413 fis, clone NT2NE2000259, moderately
similar to OOCYTE ZINC FINGER PROTEIN XLCOF6.1. ).
Length = 242
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 178 PNGNGYEPIDNGAYYVDPPR--RPYFKPTPFPGARGG 74
P G Y DNG +DP + RP+ +P +PG G
Sbjct: 43 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 79
>AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein.
Length = 589
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 237 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLS 91
T ++L ++ +S ++P + TNL+ + + TLP +T S P S
Sbjct: 405 TLSSLTSSILSSTLVPSTDMITSHTTNLTRSSPLLATLPTTITRSTPTS 453
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = -1
Query: 285 PTLKTQLR*WKTLTQETATNLLTTARTSLILPKITTLM--ETATNL----STTVHITWTL 124
P + T + T AT+ ++ RT+ LP +T+ TAT+ S+T+ TWT+
Sbjct: 3322 PPVLTSMATTPAATSSKATSS-SSPRTATTLPVLTSTATKSTATSFTPIPSSTLWTTWTV 3380
Query: 123 PADLTSSL 100
PA T+ +
Sbjct: 3381 PAQTTTPM 3388
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -3
Query: 241 GNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDPPRRPYFKPT 98
G+ P + PYI +P Y+P YEP G Y P+ P + PT
Sbjct: 1570 GSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGY---TPQSPSYSPT 1618
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -3
Query: 241 GNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDPPRRPYFKPT 98
G+ P + PYI +P Y+P YEP G Y P+ P + PT
Sbjct: 1570 GSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGY---TPQSPSYSPT 1618
>X17360-1|CAA35237.1| 255|Homo sapiens hox 5.1 protein protein.
Length = 255
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 172 GNGYEPIDNGAYYVDP----PRRPYFKPTPFPGAR 80
G+G EP G +Y P P P P P PGAR
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR 111
>X04706-1|CAA28411.1| 255|Homo sapiens protein ( Human homeobox
gene (clone HHO.c13). ).
Length = 255
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 172 GNGYEPIDNGAYYVDP----PRRPYFKPTPFPGAR 80
G+G EP G +Y P P P P P PGAR
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR 111
>BC074797-1|AAH74797.1| 255|Homo sapiens homeobox D4 protein.
Length = 255
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 172 GNGYEPIDNGAYYVDP----PRRPYFKPTPFPGAR 80
G+G EP G +Y P P P P P PGAR
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR 111
>BC016763-1|AAH16763.1| 255|Homo sapiens homeobox D4 protein.
Length = 255
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 172 GNGYEPIDNGAYYVDP----PRRPYFKPTPFPGAR 80
G+G EP G +Y P P P P P PGAR
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,984,823
Number of Sequences: 237096
Number of extensions: 1199310
Number of successful extensions: 6299
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 6172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6295
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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