Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10o04
         (591 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X56465-1|CAA39837.2|  698|Homo sapiens zinc finger transcription...    31   4.0  
BC067294-1|AAH67294.1|  761|Homo sapiens zinc finger protein 711...    31   4.0  
BC006349-1|AAH06349.1|  394|Homo sapiens ZNF711 protein protein.       31   4.0  

>X56465-1|CAA39837.2|  698|Homo sapiens zinc finger transcription
           factor protein.
          Length = 698

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 271 VADDINTFKLYRQQDDKRRHP*TYTWLLAVLISID 375
           + D INT K+ +Q+  KRR   T  W  AV+I  D
Sbjct: 279 ICDGINTNKVLKQKAKKRRRGETRQWQTAVIIGPD 313


>BC067294-1|AAH67294.1|  761|Homo sapiens zinc finger protein 711
           protein.
          Length = 761

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 271 VADDINTFKLYRQQDDKRRHP*TYTWLLAVLISID 375
           + D INT K+ +Q+  KRR   T  W  AV+I  D
Sbjct: 342 ICDGINTNKVLKQKAKKRRRGETRQWQTAVIIGPD 376


>BC006349-1|AAH06349.1|  394|Homo sapiens ZNF711 protein protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 271 VADDINTFKLYRQQDDKRRHP*TYTWLLAVLISID 375
           + D INT K+ +Q+  KRR   T  W  AV+I  D
Sbjct: 342 ICDGINTNKVLKQKAKKRRRGETRQWQTAVIIGPD 376


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,091,854
Number of Sequences: 237096
Number of extensions: 1336455
Number of successful extensions: 3937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3937
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)