Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10o04
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.9  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 332 GCRRLSSCCRYNLKVLMSSATLAFTLI 252
           GCR  S+C  +     +S  TL F  +
Sbjct: 113 GCRNFSTCSSHPTAAFISYGTLFFIYV 139


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 332 GCRRLSSCCRYNLKVLMSSATLAFTLI 252
           GCR  S+C  +     +S  TL F  +
Sbjct: 112 GCRNFSTCSSHPTAAFISYGTLFFIYV 138


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 50  ITITFTLSYIQFSFLRTECNYWRRYTSLGTYSYCFFFFVS 169
           + I FT  ++    +      W RYT+ G  + C F F++
Sbjct: 173 VIIAFTWFWVTPFTVLPLLKVWGRYTTEGFLTTCSFDFLT 212


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 25  ISCMPHFTNNNNIHIKLY 78
           IS + ++ NNNN + KLY
Sbjct: 90  ISNISNYNNNNNYNKKLY 107


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 25  ISCMPHFTNNNNIHIKLY 78
           IS + ++ NNNN + KLY
Sbjct: 328 ISNISNYNNNNNYNKKLY 345


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 50  ITITFTLSYIQFSFLRTECNYWRRYTSLGTYSYCFFFFVS 169
           + I FT  ++    +      W RYT+ G  + C F F++
Sbjct: 173 VIIAFTWFWVTPFTVLPLLKVWGRYTTEGFLTTCSFDFLT 212


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 579 SYP*LIPMWAAPQAR*PL 526
           +YP L+P W  P    PL
Sbjct: 479 TYPTLLPQWCLPPREAPL 496


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 525 LVVIEPVALPTLELIKGNFT 584
           LVV E + LP L+L+K N+T
Sbjct: 201 LVVDENIELPQLQLVK-NYT 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,456
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)