Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10n19
         (240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   1.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   2.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   4.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   6.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   6.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 164 CGIVVLYHNIWYNSKSTY 111
           CGI VL+  ++Y   ST+
Sbjct: 9   CGIAVLFLALYYYLTSTF 26


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 78  FPANVLRCNQWINIVRRQR 22
           FPA  +  + +I ++RRQR
Sbjct: 177 FPALNIVADSFIELIRRQR 195


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 143 HNIWYNSKST 114
           HN++YNS S+
Sbjct: 262 HNLYYNSPSS 271


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 27  VYVQYLSIGYILIHL 71
           V V  L  GY+LIH+
Sbjct: 58  VLVILLRAGYVLIHI 72


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 87  NFKFPANVLRCNQWINIVRRQRHEEDG 7
           N     + L  N W+    R RH+ DG
Sbjct: 119 NTNISEDCLYLNIWVPQKYRLRHKGDG 145


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 87  NFKFPANVLRCNQWINIVRRQRHEEDG 7
           N     + L  N W+    R RH+ DG
Sbjct: 119 NTNISEDCLYLNIWVPQKYRLRHKGDG 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,789
Number of Sequences: 438
Number of extensions: 1433
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)