Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10n11
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              25   0.66 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.1  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 354 VFVPKASTVKNKLNNYIHIIHFTVTAKIL 440
           VF P A T K K+    H+I   +TAK+L
Sbjct: 1   VFPPGALTKKIKVGLQAHVIPAELTAKLL 29


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 501 ERFTCAISMADYNHTSVY*FEV 436
           ER   AI   +Y+HT  Y F+V
Sbjct: 49  ERRQAAIQSGEYDHTKNYPFDV 70


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 501 ERFTCAISMADYNHTSVY*FEV 436
           ER   A+   +Y+HT  Y F+V
Sbjct: 52  ERRQAAMQSGEYDHTKNYPFDV 73


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 501 ERFTCAISMADYNHTSVY*FEV 436
           ER   AI   +++HT  Y F+V
Sbjct: 54  ERRDAAIKSGEFDHTKNYPFDV 75


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 59  YYKH*KPKLLCQPSLI 106
           Y KH  PK L QP+++
Sbjct: 17  YDKHRAPKFLGQPTIV 32


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 518 CDFKCQNDSLVLLAWL 471
           CD   QND L ++ W+
Sbjct: 63  CDLSNQNDILKVIEWV 78


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +2

Query: 26  FHLINLVFCFCYYKH*KPKLLCQPSLISHLSHYYFESGNLSLVL 157
           F+L   V  F YYK  +  ++   SL          SG L L L
Sbjct: 215 FYLPLFVMVFTYYKIYRAAVIQTKSLKLGTKQVLMASGELELTL 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,324
Number of Sequences: 438
Number of extensions: 3505
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)