Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10n09
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 363 KKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 259
           ++ASL     + +  F +  + K  RS + +PF +
Sbjct: 232 RRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHL 266


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 363 KKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 259
           ++ASL     + +  F +  + K  RS + +PF +
Sbjct: 227 RRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHL 261


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/29 (20%), Positives = 17/29 (58%)
 Frame = +3

Query: 3   NIKQQIPNNIQKVYIACINLTIFTWNVFY 89
           N+++     + +VY+ C+ + + +W  F+
Sbjct: 239 NLQRHTGYFLIQVYVPCVLIVVLSWVSFW 267


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 3   NIKQQIPNNIQKVYIACINLTIFTWNVFY 89
           ++++ + N + +VY  C+ L + +W  F+
Sbjct: 208 HLQRHMGNFLIQVYGPCVLLVVLSWVSFW 236


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 528 NQALPTCPSLLDWTANY 478
           NQ + TCP  + W  NY
Sbjct: 241 NQTI-TCPIKVSWRGNY 256


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 528 NQALPTCPSLLDWTANY 478
           NQ + TCP  + W  NY
Sbjct: 292 NQTI-TCPIKVSWRGNY 307


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 528 NQALPTCPSLLDWTANY 478
           NQ + TCP  + W  NY
Sbjct: 241 NQTI-TCPIKVSWRGNY 256


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 108 QYMEEFYKKHSK*ILLNLYKQYIL 37
           ++ ++FY++ +K  LLN Y ++ L
Sbjct: 43  RFSKDFYRQDTKNNLLNAYVRFKL 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,796
Number of Sequences: 438
Number of extensions: 4775
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)