Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10n07
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.88 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.88 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   8.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
 Frame = +3

Query: 465 SRLRKNGSIFT---AIAILVKGPI------AIISKLPGYNFDSSIIRK 581
           +RLR N  +FT   +IA+L +         AI    P Y FDSS+I +
Sbjct: 131 ARLRMNSGMFTTAFSIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEE 178


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
 Frame = +3

Query: 465 SRLRKNGSIFT---AIAILVKGPI------AIISKLPGYNFDSSIIRK 581
           +RLR N  +FT   +IA+L +         AI    P Y FDSS+I +
Sbjct: 131 ARLRMNSGMFTTAFSIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEE 178


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 39  SGTTXLTFGSEPKSFKTT 92
           +G+T LTF ++  SF TT
Sbjct: 96  TGSTPLTFVNDTVSFTTT 113


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 42  GTTXLTFGSEPKSF 83
           GTT LTF  +P+ F
Sbjct: 110 GTTNLTFEEDPEPF 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,583
Number of Sequences: 438
Number of extensions: 4094
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)