Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10n04
(684 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X80695-1|CAA56712.1| 435|Homo sapiens OXA1Hs protein. 207 3e-53
BC112331-1|AAI12332.1| 496|Homo sapiens oxidase (cytochrome c) ... 207 3e-53
BC001669-1|AAH01669.2| 437|Homo sapiens OXA1L protein protein. 207 3e-53
AJ001981-1|CAA05127.1| 495|Homo sapiens OXA1L protein. 207 3e-53
BC101684-1|AAI01685.1| 333|Homo sapiens COX18 cytochrome c oxid... 67 6e-11
AY957565-1|AAY35061.1| 333|Homo sapiens mitochondrial COX18 pro... 67 6e-11
AY957564-1|AAY35060.1| 333|Homo sapiens mitochondrial COX18 pro... 67 6e-11
AM055750-1|CAJ20055.1| 253|Homo sapiens Cox18Hs1 protein protein. 67 6e-11
AK096310-1|BAC04758.1| 333|Homo sapiens protein ( Homo sapiens ... 67 6e-11
BC020264-1|AAH20264.1| 406|Homo sapiens HERPUD family member 2 ... 32 1.7
BC005091-1|AAH05091.1| 406|Homo sapiens HERPUD2 protein protein. 32 1.7
>X80695-1|CAA56712.1| 435|Homo sapiens OXA1Hs protein.
Length = 435
Score = 207 bits (505), Expect = 3e-53
Identities = 94/206 (45%), Positives = 140/206 (67%)
Frame = -3
Query: 682 MMLFMKEXGLNXLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQ 503
M L+ K+ G+ K LI+P+ Q P+FISFF+ LR MAN PV S+ GGLWWF DLTV D
Sbjct: 202 MALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDP 261
Query: 502 YFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIPLVMIPFTINFPGAILVYWC 323
++LP+ +ATMWA +ELG + G + + ++Q MR V+R +PL+ +P T++FP A+ +YW
Sbjct: 262 IYILPLAVTATMWAVLELGAETG-VQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWL 320
Query: 322 SSNFISLMQVGFLKIPAVREYFKIPKLIKHSADALPIKKKGFVEGAKDSWTNMKLSKELA 143
SSN SL+QV L+IPAVR KIP+ + H D LP ++GF+E K W N +++++L
Sbjct: 321 SSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLP-PREGFLESFKKGWKNAEMTRQLR 379
Query: 142 ERQRIDEMIFTKAGKGPLQKTYKYDP 65
ER++ A +GPL++T+ ++P
Sbjct: 380 EREQRMRNQLELAARGPLRQTFTHNP 405
>BC112331-1|AAI12332.1| 496|Homo sapiens oxidase (cytochrome c)
assembly 1-like protein.
Length = 496
Score = 207 bits (505), Expect = 3e-53
Identities = 94/206 (45%), Positives = 140/206 (67%)
Frame = -3
Query: 682 MMLFMKEXGLNXLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQ 503
M L+ K+ G+ K LI+P+ Q P+FISFF+ LR MAN PV S+ GGLWWF DLTV D
Sbjct: 262 MALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDP 321
Query: 502 YFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIPLVMIPFTINFPGAILVYWC 323
++LP+ +ATMWA +ELG + G + + ++Q MR V+R +PL+ +P T++FP A+ +YW
Sbjct: 322 IYILPLAVTATMWAVLELGAETG-VQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWL 380
Query: 322 SSNFISLMQVGFLKIPAVREYFKIPKLIKHSADALPIKKKGFVEGAKDSWTNMKLSKELA 143
SSN SL+QV L+IPAVR KIP+ + H D LP ++GF+E K W N +++++L
Sbjct: 381 SSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLP-PREGFLESFKKGWKNAEMTRQLR 439
Query: 142 ERQRIDEMIFTKAGKGPLQKTYKYDP 65
ER++ A +GPL++T+ ++P
Sbjct: 440 EREQRMRNQLELAARGPLRQTFTHNP 465
>BC001669-1|AAH01669.2| 437|Homo sapiens OXA1L protein protein.
Length = 437
Score = 207 bits (505), Expect = 3e-53
Identities = 94/206 (45%), Positives = 140/206 (67%)
Frame = -3
Query: 682 MMLFMKEXGLNXLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQ 503
M L+ K+ G+ K LI+P+ Q P+FISFF+ LR MAN PV S+ GGLWWF DLTV D
Sbjct: 204 MALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDP 263
Query: 502 YFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIPLVMIPFTINFPGAILVYWC 323
++LP+ +ATMWA +ELG + G + + ++Q MR V+R +PL+ +P T++FP A+ +YW
Sbjct: 264 IYILPLAVTATMWAVLELGAETG-VQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWL 322
Query: 322 SSNFISLMQVGFLKIPAVREYFKIPKLIKHSADALPIKKKGFVEGAKDSWTNMKLSKELA 143
SSN SL+QV L+IPAVR KIP+ + H D LP ++GF+E K W N +++++L
Sbjct: 323 SSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLP-PREGFLESFKKGWKNAEMTRQLR 381
Query: 142 ERQRIDEMIFTKAGKGPLQKTYKYDP 65
ER++ A +GPL++T+ ++P
Sbjct: 382 EREQRMRNQLELAARGPLRQTFTHNP 407
>AJ001981-1|CAA05127.1| 495|Homo sapiens OXA1L protein.
Length = 495
Score = 207 bits (505), Expect = 3e-53
Identities = 94/206 (45%), Positives = 140/206 (67%)
Frame = -3
Query: 682 MMLFMKEXGLNXLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQ 503
M L+ K+ G+ K LI+P+ Q P+FISFF+ LR MAN PV S+ GGLWWF DLTV D
Sbjct: 262 MALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDP 321
Query: 502 YFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIPLVMIPFTINFPGAILVYWC 323
++LP+ +ATMWA +ELG + G + + ++Q MR V+R +PL+ +P T++FP A+ +YW
Sbjct: 322 IYILPLAVTATMWAVLELGAETG-VQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWL 380
Query: 322 SSNFISLMQVGFLKIPAVREYFKIPKLIKHSADALPIKKKGFVEGAKDSWTNMKLSKELA 143
SSN SL+QV L+IPAVR KIP+ + H D LP ++GF+E K W N +++++L
Sbjct: 381 SSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLP-PREGFLESFKKGWKNAEMTRQLR 439
Query: 142 ERQRIDEMIFTKAGKGPLQKTYKYDP 65
ER++ A +GPL++T+ ++P
Sbjct: 440 EREQRMRNQLELAARGPLRQTFTHNP 465
>BC101684-1|AAI01685.1| 333|Homo sapiens COX18 cytochrome c oxidase
assembly homolog (S. cerevisiae) protein.
Length = 333
Score = 66.9 bits (156), Expect = 6e-11
Identities = 32/104 (30%), Positives = 54/104 (51%)
Frame = -3
Query: 559 ESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIP 380
E + GG+ WF DLT PD ++LP+ +E+ ++ + Y +RA+
Sbjct: 205 EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGMSRFQTYITYFVRAMS 264
Query: 379 LVMIPFTINFPGAILVYWCSSNFISLMQVGFLKIPAVREYFKIP 248
++MIP P +I++YW S+F+ L Q L+ P R+ +IP
Sbjct: 265 VLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIP 308
>AY957565-1|AAY35061.1| 333|Homo sapiens mitochondrial COX18
protein.
Length = 333
Score = 66.9 bits (156), Expect = 6e-11
Identities = 32/104 (30%), Positives = 54/104 (51%)
Frame = -3
Query: 559 ESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIP 380
E + GG+ WF DLT PD ++LP+ +E+ ++ + Y +RA+
Sbjct: 205 EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGMSRFQTYITYFVRAMS 264
Query: 379 LVMIPFTINFPGAILVYWCSSNFISLMQVGFLKIPAVREYFKIP 248
++MIP P +I++YW S+F+ L Q L+ P R+ +IP
Sbjct: 265 VLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIP 308
>AY957564-1|AAY35060.1| 333|Homo sapiens mitochondrial COX18
protein.
Length = 333
Score = 66.9 bits (156), Expect = 6e-11
Identities = 32/104 (30%), Positives = 54/104 (51%)
Frame = -3
Query: 559 ESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIP 380
E + GG+ WF DLT PD ++LP+ +E+ ++ + Y +RA+
Sbjct: 205 EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGMSRFQTYITYFVRAMS 264
Query: 379 LVMIPFTINFPGAILVYWCSSNFISLMQVGFLKIPAVREYFKIP 248
++MIP P +I++YW S+F+ L Q L+ P R+ +IP
Sbjct: 265 VLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIP 308
>AM055750-1|CAJ20055.1| 253|Homo sapiens Cox18Hs1 protein protein.
Length = 253
Score = 66.9 bits (156), Expect = 6e-11
Identities = 32/104 (30%), Positives = 54/104 (51%)
Frame = -3
Query: 559 ESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIP 380
E + GG+ WF DLT PD ++LP+ +E+ ++ + Y +RA+
Sbjct: 125 EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGMSRFQTYITYFVRAMS 184
Query: 379 LVMIPFTINFPGAILVYWCSSNFISLMQVGFLKIPAVREYFKIP 248
++MIP P +I++YW S+F+ L Q L+ P R+ +IP
Sbjct: 185 VLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIP 228
>AK096310-1|BAC04758.1| 333|Homo sapiens protein ( Homo sapiens
cDNA FLJ38991 fis, clone NT2RI2008622. ).
Length = 333
Score = 66.9 bits (156), Expect = 6e-11
Identities = 32/104 (30%), Positives = 54/104 (51%)
Frame = -3
Query: 559 ESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIELGVDGGRLDAQNMQVMRYVLRAIP 380
E + GG+ WF DLT PD ++LP+ +E+ ++ + Y +RA+
Sbjct: 205 EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGMSRFQTYITYFVRAMS 264
Query: 379 LVMIPFTINFPGAILVYWCSSNFISLMQVGFLKIPAVREYFKIP 248
++MIP P +I++YW S+F+ L Q L+ P R+ +IP
Sbjct: 265 VLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIP 308
>BC020264-1|AAH20264.1| 406|Homo sapiens HERPUD family member 2
protein.
Length = 406
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 234 CFINF--GILKYSLTAGIFKKPTCIKDMKLLEHQ*TKMAPGKLIVKGIITKGIALKTYLI 407
CF+N+ G LK L+ ++ KD +L+ ++ P L +K I+ K Y +
Sbjct: 28 CFLNWTVGKLKTHLS-NVYPSKPLTKDQRLVYSG--RLLPDHLQLKDILRKQ---DEYHM 81
Query: 408 TCIFCASRRPPSTPSS 455
+ C SR PPS+P S
Sbjct: 82 VHLVCTSRTPPSSPKS 97
>BC005091-1|AAH05091.1| 406|Homo sapiens HERPUD2 protein protein.
Length = 406
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 234 CFINF--GILKYSLTAGIFKKPTCIKDMKLLEHQ*TKMAPGKLIVKGIITKGIALKTYLI 407
CF+N+ G LK L+ ++ KD +L+ ++ P L +K I+ K Y +
Sbjct: 28 CFLNWTVGKLKTHLS-NVYPSKPLTKDQRLVYSG--RLLPDHLQLKDILRKQ---DEYHM 81
Query: 408 TCIFCASRRPPSTPSS 455
+ C SR PPS+P S
Sbjct: 82 VHLVCTSRTPPSSPKS 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,829,347
Number of Sequences: 237096
Number of extensions: 1973695
Number of successful extensions: 3781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3768
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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