Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10n01
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.5  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   7.9  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 417 LEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGL 292
           L + ++  +QQ      +Y ++Q + LQ  +P  G   G+GL
Sbjct: 179 LALQQQRLIQQLQITQSQYLLQQGLGLQGHNPSSGLQPGEGL 220


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 157 SEYIIKASTTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEAL 300
           + +I  AS T  E++V   +  D+I+   G R ++        D+E +
Sbjct: 424 ARHIPHASVTDSENTVPRYLSPDVISALKGVRFIAQHIKNADKDNEVI 471


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 297 GLMIGVELVEPGTKTPLTTSKVNDIHENIK 208
           G  + VE +E GT+         D+HE I+
Sbjct: 68  GNTLNVEKLESGTRELTPDDFTEDVHEIIE 97


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 297 GLMIGVELVEPGTKTPLTTSKVNDIHENIK 208
           G  + VE +E GT+         D+HE I+
Sbjct: 68  GNTLNVEKLESGTRELTPDDFTEDVHEIIE 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,056
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)