Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10m21
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    30   0.35 
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   2.5  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -2

Query: 578 SQLVYNKYINKYLYGLLRFYYLCLVIQ*LNALTLTTYKFRGIRYKMSIVSMHKKYLS 408
           S+LV    +  +L+G LRF +L L I  + A+ +  Y+    R K++    + +YLS
Sbjct: 156 SRLVLYTAVMSFLFGYLRFGFLSLFI--IMAVCIQYYRICDRRVKVNFKDDYTRYLS 210


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 295 LRREF*VSVLQYNGCPTLQTETHYCFTA 378
           L+R   V V+ Y  CP L +   +CF+A
Sbjct: 506 LKRGIAVVVVGYPACPLLTSRVRFCFSA 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,081
Number of Sequences: 5004
Number of extensions: 52761
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)